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Os07g0435100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to 26S proteasome subunit RPN12.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.2 (0.0151) R2 : 0.00012
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.00741 (0.0317) R2dN8 : 0.000155 R2N8 : 0.00012
σ : 0.283
deviance : 36.88
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
19.12 0.205 12.2 0.239 0.436 -0.343 0.34 0.17 0.106 0.857 19.9 1538 -- --
19.16 0.204 12.2 0.219 0.419 -0.353 0.353 -- 0.0942 0.739 20.82 1606 -- --
19.6 0.206 12.2 0.223 0.437 -0.337 -- 0.153 0.104 0.856 20 1536 -- --
19.64 0.206 12.2 0.2 0.431 -0.349 -- -- 0.0966 0.85 25 1564 -- --
23.17 0.225 12.2 0.177 -- -0.632 -- -0.259 0.02 -- -20.49 1725 -- --
23.59 0.228 12.2 0.165 0.443 -- 0.276 -- 0.0196 0.831 -- -- -- --
23.91 0.229 12.2 0.155 0.442 -- -- -- 0.0182 0.847 -- -- -- --
23.32 0.226 12.2 0.169 -- -0.631 -- -- 0.019 -- -0.000127 1729 -- --
20.6 0.211 12.2 -- 0.436 -0.329 -- -- 0.0693 0.874 25.82 1576 -- --
36.11 0.281 12.2 0.171 -- -- -- -- 0.0264 -- -- -- -- --
24.54 0.232 12.2 -- 0.445 -- -- -- 0.000936 0.862 -- -- -- --
24.08 0.229 12.2 -- -- -0.631 -- -- 0.000231 -- -0.000127 1729 -- --
36.88 0.283 12.2 -- -- -- -- -- 0.00741 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 18.49 wind 7 43200 > th dose dependent rect. 17 1
2 18.55 radiation 30 1440 < th dose independent rect. 15 19
3 18.55 temperature 30 90 < th dose dependent rect. 5 14
4 18.61 radiation 40 1440 < th dose dependent rect. 15 19
5 18.67 radiation 10 1440 > th dose independent rect. 16 20
6 18.68 radiation 30 1440 < th dose independent rect. 8 2
9 18.69 radiation 1 1440 > th dose dependent rect. 15 19
13 18.73 wind 9 43200 > th dose dependent rect. 14 7
17 18.75 wind 7 43200 > th dose independent rect. 17 1
18 18.76 wind 9 43200 > th dose independent rect. 14 7
21 18.77 radiation 30 1440 < th dose independent sin 11 NA
22 18.77 radiation 10 1440 > th dose independent rect. 16 18
34 18.82 wind 7 43200 < th dose independent rect. 17 1
37 18.83 radiation 30 1440 < th dose independent rect. 6 4
46 18.84 radiation 30 1440 < th dose independent rect. 18 16
48 18.84 wind 7 43200 > th dose independent rect. 17 22
49 18.84 temperature 25 1440 > th dose dependent rect. 8 1
50 18.84 temperature 10 1440 > th dose dependent rect. 18 1
53 18.85 wind 9 43200 < th dose independent rect. 14 8
55 18.85 wind 7 43200 < th dose independent rect. 17 22
56 18.85 temperature 25 1440 > th dose dependent rect. 7 4
63 18.86 wind 9 43200 > th dose independent rect. 14 16
64 18.86 radiation 30 1440 > th dose independent rect. 15 19
70 18.86 wind 9 43200 > th dose dependent rect. 14 16
73 18.87 wind 9 43200 < th dose independent rect. 14 16
105 18.91 radiation 30 1440 > th dose independent rect. 8 2
114 18.92 radiation 10 1440 > th dose dependent sin 11 NA
170 18.97 wind 9 43200 > th dose dependent rect. 14 4
172 18.97 wind 7 43200 > th dose dependent rect. 11 11
174 18.98 radiation 10 1440 > th dose independent sin 11 NA
175 18.98 radiation 30 1440 > th dose independent sin 11 NA
177 18.98 wind 9 43200 < th dose independent rect. 14 11
181 18.98 radiation 40 1440 < th dose dependent sin 12 NA
186 18.98 wind 7 43200 > th dose dependent rect. 11 19
199 18.99 radiation 40 1440 < th dose dependent rect. 8 2
204 19.00 radiation 30 1440 > th dose independent sin 9 NA
211 19.00 temperature 30 1440 < th dose dependent rect. 18 1
244 19.02 radiation 10 270 < th dose dependent rect. 5 12
247 19.03 wind 7 43200 > th dose independent rect. 3 12
248 19.03 wind 7 43200 < th dose independent rect. 3 12
251 19.03 humidity 70 1440 > th dose independent rect. 17 20
263 19.03 wind 5 43200 > th dose dependent rect. 17 22
284 19.04 wind 7 43200 > th dose independent rect. 10 20
298 19.05 wind 7 43200 > th dose independent rect. 12 2
299 19.05 wind 7 43200 < th dose independent rect. 12 2
321 19.05 radiation 20 90 < th dose dependent rect. 5 23
322 19.06 wind 9 43200 > th dose independent rect. 14 4
333 19.06 wind 7 43200 > th dose independent rect. 3 19
339 19.06 wind 7 43200 < th dose independent rect. 10 20
347 19.06 radiation 10 1440 < th dose dependent rect. 17 1
353 19.07 wind 9 43200 < th dose independent rect. 14 4
369 19.07 wind 7 43200 < th dose independent rect. 2 20
377 19.07 wind 7 43200 < th dose independent rect. 24 22
393 19.08 wind 7 43200 > th dose independent no NA NA
394 19.08 wind 9 43200 < th dose independent sin 15 NA
396 19.08 wind 9 43200 < th dose independent rect. 12 10
431 19.09 wind 7 43200 < th dose independent no NA NA
434 19.09 wind 7 43200 > th dose independent rect. 11 4
465 19.10 wind 7 43200 < th dose independent rect. 10 5
472 19.10 wind 9 43200 > th dose independent rect. 12 10
489 19.10 temperature 15 10 > th dose dependent sin 0 NA
496 19.10 radiation 1 1440 > th dose dependent rect. 8 2
506 19.11 wind 7 43200 < th dose independent sin 3 NA
510 19.11 radiation 10 1440 > th dose independent rect. 6 6
511 19.11 wind 7 43200 > th dose independent rect. 8 7
533 19.11 humidity 70 1440 < th dose independent rect. 16 20
549 19.11 temperature 25 1440 > th dose dependent rect. 17 19
553 19.12 wind 7 43200 > th dose independent sin 3 NA
576 19.12 temperature 30 1440 < th dose independent rect. 18 21
581 19.12 wind 7 43200 > th dose dependent sin 16 NA
598 19.13 wind 9 43200 > th dose independent sin 15 NA
639 19.13 radiation 10 1440 > th dose dependent rect. 6 4
660 19.13 wind 5 43200 > th dose dependent rect. 3 13
682 19.14 wind 5 43200 < th dose independent sin 12 NA
688 19.14 wind 9 43200 < th dose independent rect. 17 13
709 19.14 radiation 40 1440 < th dose dependent rect. 17 4
731 19.15 atmosphere 1000 43200 > th dose independent rect. 21 1
732 19.15 atmosphere 1000 43200 < th dose independent rect. 21 1
738 19.15 wind 9 43200 < th dose independent rect. 11 14
759 19.15 temperature 30 10 < th dose dependent sin 0 NA
800 19.16 wind 5 43200 > th dose independent sin 12 NA
803 19.16 atmosphere 1000 43200 > th dose independent rect. 23 1
838 19.16 wind 7 43200 > th dose dependent rect. 11 7
842 19.16 temperature 30 10 < th dose dependent rect. 6 12
843 19.16 wind 7 43200 > th dose dependent rect. 17 13
845 19.16 temperature 25 1440 > th dose dependent rect. 6 16
885 19.17 temperature 25 1440 > th dose dependent sin 4 NA
900 19.17 temperature 25 1440 > th dose dependent rect. 7 14
919 19.17 wind 5 43200 > th dose dependent rect. 24 22
929 19.18 wind 9 43200 > th dose independent rect. 17 13
946 19.18 wind 5 43200 > th dose dependent sin 2 NA
982 19.18 radiation 1 1440 > th dose dependent rect. 11 23