BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0435100 Os07g0435100|AK061383
         (267 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G64520.1  | chr1:23956459-23958120 FORWARD LENGTH=268          414   e-116
AT5G42040.1  | chr5:16813835-16814749 REVERSE LENGTH=234          292   1e-79

>AT1G64520.1 | chr1:23956459-23958120 FORWARD LENGTH=268
          Length = 267

 Score =  414 bits (1063), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 202/267 (75%), Positives = 223/267 (83%)

Query: 1   MDPKLVEVTQLFSRFKAAFARNDFDTCVDLLSQLKVRLTKFPSLPPSFQQTPNAVEELKI 60
           MDP+L EV+Q F RFKAAFAR D++TC DLLSQLKV LTKF SLPP F+ +PNA +EL I
Sbjct: 1   MDPQLTEVSQQFERFKAAFARKDYNTCSDLLSQLKVLLTKFTSLPPLFENSPNAAKELTI 60

Query: 61  ARDIYEHAVVLSVKIEDQDAFERDFCQLKPYYMDTCGIIPPSPQEYPIXXXXXXXXXVQN 120
           ARDIYEHAVVLSVK EDQDAFERDF QLKPYY+D    IP SPQE  I         VQN
Sbjct: 61  ARDIYEHAVVLSVKTEDQDAFERDFFQLKPYYVDARNRIPQSPQENLILGLNLLRLLVQN 120

Query: 121 RIAEFHTELELLPVTALENPCIKHAVELEQSFMEGAYNRVLSARQAVPHETYVYFMDLLA 180
           RIAEFHTELELL    LE+PCIKHAVELEQSFMEGAYNRVLSARQ  P  TYVYFMDLLA
Sbjct: 121 RIAEFHTELELLSSATLEDPCIKHAVELEQSFMEGAYNRVLSARQTAPDATYVYFMDLLA 180

Query: 181 KTVRDELAGCSEKGYDYMSIAEARQVLMFSSDKELHQYIAEEHPEWEVKDGSVFFQKAKE 240
           KT+RDE+AGCSEK YDY+SI++ARQ+L+FSSD+EL  Y+ +EHPEWEVK+G V FQKAKE
Sbjct: 181 KTIRDEIAGCSEKAYDYVSISDARQMLLFSSDQELLTYVTDEHPEWEVKEGFVVFQKAKE 240

Query: 241 TQPCKEIPSLQVINQTLSYARELERIV 267
           T PCKEIPSLQ+INQTLSYARELERIV
Sbjct: 241 TAPCKEIPSLQLINQTLSYARELERIV 267



>AT5G42040.1 | chr5:16813835-16814749 REVERSE LENGTH=234
          Length = 233

 Score =  292 bits (747), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 154/267 (57%), Positives = 179/267 (67%), Gaps = 34/267 (12%)

Query: 1   MDPKLVEVTQLFSRFKAAFARNDFDTCVDLLSQLKVRLTKFPSLPPSFQQTPNAVEELKI 60
           MDP+L+EV+Q F RFKAAF   DFDTC  LLSQLK                         
Sbjct: 1   MDPQLMEVSQQFERFKAAFIIKDFDTCSSLLSQLK------------------------- 35

Query: 61  ARDIYEHAVVLSVKIEDQDAFERDFCQLKPYYMDTCGIIPPSPQEYPIXXXXXXXXXVQN 120
              +++H ++               C L  +++ T   IPPSPQE  I         VQN
Sbjct: 36  ---LFDHYLISLSLNALLLLT----CAL--FFLCTRNRIPPSPQENLIMGLNLLRLLVQN 86

Query: 121 RIAEFHTELELLPVTALENPCIKHAVELEQSFMEGAYNRVLSARQAVPHETYVYFMDLLA 180
           RIAEFHTEL LL    LENPCIKHAVELEQSFMEGAYNRVLSARQ  P ETYVYFMDLLA
Sbjct: 87  RIAEFHTELGLLSSATLENPCIKHAVELEQSFMEGAYNRVLSARQTAPDETYVYFMDLLA 146

Query: 181 KTVRDELAGCSEKGYDYMSIAEARQVLMFSSDKELHQYIAEEHPEWEVKDGSVFFQKAKE 240
           KT+RDE+AGCSEK YD++SI+E  ++L+FSSD++L  Y+ EEHPEWEVKDG V FQK +E
Sbjct: 147 KTIRDEIAGCSEKAYDHLSISEGCKMLLFSSDQQLLTYVNEEHPEWEVKDGLVVFQKTRE 206

Query: 241 TQPCKEIPSLQVINQTLSYARELERIV 267
           T PCKEIPSLQ+INQTLSY RELERI+
Sbjct: 207 TAPCKEIPSLQLINQTLSYTRELERIL 233



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.135    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,405,130
Number of extensions: 202393
Number of successful extensions: 527
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 527
Number of HSP's successfully gapped: 3
Length of query: 267
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 170
Effective length of database: 8,447,217
Effective search space: 1436026890
Effective search space used: 1436026890
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)