Os07g0418000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0418000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 85.6 | 0.435 | 9.03 | -2.06 | 1.14 | 0.945 | 0.345 | -0.246 | -0.806 | 5.09 | 20.81 | 12 | -- | -- |
| 85.55 | 0.434 | 9.02 | -2.01 | 1.13 | 0.925 | 0.391 | -- | -0.789 | 5.08 | 21.1 | 12 | -- | -- |
| 85.72 | 0.435 | 9.03 | -2.08 | 1.13 | 0.959 | -- | -0.39 | -0.809 | 5.05 | 21.11 | 9 | -- | -- |
| 85.86 | 0.434 | 9.02 | -2.01 | 1.13 | 0.93 | -- | -- | -0.789 | 5.07 | 21.15 | 7 | -- | -- |
| 139.14 | 0.552 | 9.01 | -1.85 | -- | 0.182 | -- | -0.123 | -0.649 | -- | 20.4 | 4 | -- | -- |
| 98.71 | 0.466 | 8.98 | -1.83 | 0.887 | -- | 0.296 | -- | -0.635 | 6.06 | -- | -- | -- | -- |
| 98.92 | 0.466 | 8.99 | -1.82 | 0.889 | -- | -- | -- | -0.636 | 6.03 | -- | -- | -- | -- |
| 139.04 | 0.552 | 9.01 | -1.84 | -- | 0.23 | -- | -- | -0.647 | -- | 15.3 | 8 | -- | -- |
| 184.67 | 0.636 | 8.95 | -- | 0.95 | 0.338 | -- | -- | -0.472 | 5.72 | 23.39 | 3 | -- | -- |
| 139.85 | 0.553 | 9 | -1.8 | -- | -- | -- | -- | -0.616 | -- | -- | -- | -- | -- |
| 186.52 | 0.639 | 8.94 | -- | 0.862 | -- | -- | -- | -0.433 | 6.13 | -- | -- | -- | -- |
| 213.66 | 0.681 | 8.93 | -- | -- | -0.837 | -- | -- | -0.319 | -- | -8.389 | 413 | -- | -- |
| 225.06 | 0.7 | 8.96 | -- | -- | -- | -- | -- | -0.416 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 82.93 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 7 | 15 |
| 3 | 83.53 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 16 | 22 |
| 5 | 83.78 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 13 | 17 |
| 7 | 83.89 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 17 | 20 |
| 21 | 84.35 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 13 | 20 |
| 24 | 84.45 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 13 | 21 |
| 25 | 84.49 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 11 | 21 |
| 42 | 84.83 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 24 | 19 |
| 48 | 84.94 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 22 | 20 |
| 53 | 85.00 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 54 | 85.01 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 1 | 18 |
| 66 | 85.21 | wind | 1.0 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 77 | 85.26 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 2 | 17 |
| 80 | 85.30 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 15 | 17 |
| 88 | 85.38 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 9 | 15 |
| 93 | 85.40 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 13 | 21 |
| 96 | 85.41 | temperature | 25.0 | 270 | > th | dose dependent | sin | 10 | NA |
| 133 | 85.66 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 4 | 15 |
| 134 | 85.66 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 135 | 85.68 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 19 | 1 |
| 138 | 85.70 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 139 | 85.73 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 22 | 23 |
| 142 | 85.74 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 165 | 85.86 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 19 | 1 |
| 171 | 85.90 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 19 | 20 |
| 174 | 85.92 | atmosphere | 1010.0 | 720 | < th | dose dependent | rect. | 9 | 13 |
| 179 | 85.97 | temperature | 20.0 | 10 | > th | dose dependent | no | NA | NA |
| 183 | 85.99 | atmosphere | 1005.0 | 720 | < th | dose dependent | rect. | 17 | 2 |
| 188 | 86.01 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 12 | 22 |
| 209 | 86.11 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 214 | 86.12 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 12 | 7 |
| 233 | 86.20 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 248 | 86.25 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 10 | 11 |
| 253 | 86.26 | temperature | 30.0 | 10 | < th | dose dependent | sin | 23 | NA |
| 266 | 86.31 | wind | 1.0 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 271 | 86.32 | atmosphere | 1010.0 | 720 | < th | dose dependent | sin | 19 | NA |
| 273 | 86.32 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 278 | 86.33 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 300 | 86.39 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 19 | 8 |
| 301 | 86.39 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 15 | 17 |
| 304 | 86.40 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 13 | 8 |
| 310 | 86.41 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 20 | 5 |
| 314 | 86.42 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 317 | 86.42 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 333 | 86.45 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 13 | 6 |
| 341 | 86.46 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 342 | 86.47 | atmosphere | 1000.0 | 270 | < th | dose independent | sin | 14 | NA |
| 357 | 86.50 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 370 | 86.53 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 382 | 86.56 | temperature | 20.0 | 10 | > th | dose dependent | sin | 0 | NA |
| 390 | 86.57 | temperature | 30.0 | 10 | < th | dose dependent | no | NA | NA |
| 398 | 86.58 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 420 | 86.63 | atmosphere | 1010.0 | 720 | < th | dose dependent | rect. | 13 | 8 |
| 434 | 86.68 | temperature | 10.0 | 10 | > th | dose dependent | no | NA | NA |
| 440 | 86.69 | atmosphere | 1005.0 | 1440 | < th | dose independent | rect. | 9 | 1 |
| 441 | 86.69 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 13 | 8 |
| 442 | 86.69 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 9 | 12 |
| 446 | 86.69 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 468 | 86.73 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 469 | 86.73 | temperature | 10.0 | 10 | > th | dose dependent | sin | 0 | NA |
| 472 | 86.73 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 21 | 18 |
| 480 | 86.75 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 12 | 8 |
| 489 | 86.76 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 490 | 86.77 | atmosphere | 1005.0 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 492 | 86.77 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 500 | 86.79 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 10 | 1 |
| 504 | 86.79 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 11 | 4 |
| 519 | 86.81 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 1 | 19 |
| 529 | 86.83 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 10 | 1 |
| 531 | 86.83 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 537 | 86.83 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 557 | 86.85 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 1 | 17 |
| 584 | 86.89 | atmosphere | 1005.0 | 1440 | > th | dose independent | rect. | 8 | 10 |
| 596 | 86.90 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 23 | 19 |
| 603 | 86.92 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 20 | 16 |
| 604 | 86.92 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 11 | 4 |
| 632 | 86.95 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 22 | 14 |
| 642 | 86.96 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 4 | 8 |
| 643 | 86.96 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 2 | 10 |
| 675 | 86.99 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 15 | 2 |
| 719 | 87.03 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 24 | 1 |
| 754 | 87.06 | atmosphere | 1005.0 | 1440 | < th | dose independent | rect. | 8 | 10 |
| 763 | 87.07 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 4 |
| 781 | 87.09 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 17 | 19 |
| 831 | 87.13 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 24 | 3 |
| 839 | 87.14 | atmosphere | 1000.0 | 270 | < th | dose independent | rect. | 15 | 14 |
| 871 | 87.16 | temperature | 30.0 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 875 | 87.16 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 11 | 7 |
| 904 | 87.17 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 908 | 87.17 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 985 | 87.22 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 23 | 16 |