BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0418000 Os07g0418000|AK065942
         (269 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G45990.1  | chr2:18919402-18921043 FORWARD LENGTH=269          384   e-107

>AT2G45990.1 | chr2:18919402-18921043 FORWARD LENGTH=269
          Length = 268

 Score =  384 bits (985), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 186/267 (69%), Positives = 214/267 (80%)

Query: 3   GDLYALDFDGVLCDSCGESSLSAVKAAKVRWPWVFEQVDAAMEEWIVEQMYTLRPVVETG 62
           GDLYALDFDGVLCDSCGESSLSAVKAAKVRWP +FE VD+A+EEWIV+QM+ +RPVVETG
Sbjct: 2   GDLYALDFDGVLCDSCGESSLSAVKAAKVRWPDLFEGVDSALEEWIVDQMHIVRPVVETG 61

Query: 63  YENXXXXXXXXXXXXPSARRSSVADGLSIQEILENWLKLKPTIMSEWNEDRDSLVDLFGS 122
           YEN            PS R+SSVA+GL++  ILE+W K KP IM  W+EDRD+LVDLFG 
Sbjct: 62  YENLLLVRLLLETKIPSIRKSSVAEGLTVDGILESWAKFKPVIMEAWDEDRDALVDLFGK 121

Query: 123 IRDDWIENDLSGWIGANRFYPGTADALKFSSSEVYIVTTKQGRFAEALLKELAGIEFPSE 182
           +RDDWI  DL+ WIGANRFYPG +DALKF+SS++YIVTTKQGRFAEALL+E+AG+  PSE
Sbjct: 122 VRDDWINKDLTTWIGANRFYPGVSDALKFASSKIYIVTTKQGRFAEALLREIAGVIIPSE 181

Query: 183 RIYGLGTGPKVKVXXXXXXXXXXXXXTLHFVEDRLATLKNVIKEPALDQWNLYLVNWGYN 242
           RIYGLG+GPKV+V             TLHFVEDRLATLKNVIKEP LD+W+LYL  WGYN
Sbjct: 182 RIYGLGSGPKVEVLKLLQDKPEHQGLTLHFVEDRLATLKNVIKEPELDKWSLYLGTWGYN 241

Query: 243 TPKEREDAEGISRIQVIDLPGFSQKLK 269
           T KER +A GI RIQVI+L  FS KLK
Sbjct: 242 TEKERAEAAGIPRIQVIELSTFSNKLK 268



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.135    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,438,505
Number of extensions: 197703
Number of successful extensions: 425
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 425
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 172
Effective length of database: 8,447,217
Effective search space: 1452921324
Effective search space used: 1452921324
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 111 (47.4 bits)