Os07g0417800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0417800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 96.9 | 0.462 | 11.2 | -1.13 | 0.514 | -1.92 | 0.144 | 1.96 | -1.24 | 7.66 | 30.15 | 270 | -- | -- |
| 99.2 | 0.467 | 11.1 | -0.746 | 0.289 | -1.93 | 1.11 | -- | -1.13 | 4.31 | 30.15 | 270 | -- | -- |
| 96.95 | 0.459 | 11.2 | -1.13 | 0.511 | -1.91 | -- | 2 | -1.24 | 7.72 | 30.11 | 269 | -- | -- |
| 100.96 | 0.468 | 11.1 | -0.79 | 0.516 | -1.91 | -- | -- | -1.16 | 7.64 | 29.41 | 268 | -- | -- |
| 102.14 | 0.473 | 11.2 | -0.963 | -- | -1.67 | -- | 1.66 | -1.16 | -- | 30.11 | 269 | -- | -- |
| 148.58 | 0.571 | 11.1 | -0.286 | 0.447 | -- | -0.483 | -- | -0.766 | 12.9 | -- | -- | -- | -- |
| 149.51 | 0.573 | 11.1 | -0.305 | 0.447 | -- | -- | -- | -0.769 | 12.6 | -- | -- | -- | -- |
| 105.31 | 0.478 | 11.1 | -0.708 | -- | -1.68 | -- | -- | -1.12 | -- | 28.15 | 14 | -- | -- |
| 115.43 | 0.5 | 11.1 | -- | 0.47 | -1.57 | -- | -- | -1.02 | 8.57 | 29.5 | 289 | -- | -- |
| 162.06 | 0.595 | 11.1 | -0.32 | -- | -- | -- | -- | -0.777 | -- | -- | -- | -- | -- |
| 151.96 | 0.577 | 11 | -- | 0.452 | -- | -- | -- | -0.735 | 12.6 | -- | -- | -- | -- |
| 117.54 | 0.507 | 11.1 | -- | -- | -1.47 | -- | -- | -1 | -- | 28.22 | 10 | -- | -- |
| 164.76 | 0.599 | 11.1 | -- | -- | -- | -- | -- | -0.741 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 93.31 | temperature | 10 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 2 | 93.70 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 20 |
| 9 | 94.73 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 19 |
| 12 | 94.86 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 23 |
| 13 | 94.92 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 21 |
| 16 | 95.08 | temperature | 15 | 90 | > th | dose dependent | rect. | 3 | 23 |
| 28 | 95.50 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 15 |
| 59 | 96.11 | temperature | 10 | 720 | > th | dose dependent | sin | 2 | NA |
| 64 | 96.12 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 21 |
| 73 | 96.21 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 22 |
| 76 | 96.25 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 21 |
| 101 | 96.47 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 157 | 96.91 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 165 | 96.98 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 176 | 97.05 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 181 | 97.12 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 18 |
| 182 | 97.12 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 194 | 97.20 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 197 | 97.22 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 203 | 97.25 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 206 | 97.27 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 222 | 97.40 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 226 | 97.43 | temperature | 15 | 720 | > th | dose dependent | rect. | 14 | 23 |
| 247 | 97.61 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 332 | 98.27 | temperature | 25 | 1440 | < th | dose dependent | rect. | 9 | 21 |
| 339 | 98.32 | temperature | 15 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 436 | 98.53 | temperature | 30 | 1440 | < th | dose dependent | sin | 16 | NA |
| 438 | 98.53 | temperature | 10 | 1440 | > th | dose dependent | rect. | 10 | 20 |
| 517 | 98.63 | temperature | 30 | 1440 | < th | dose dependent | rect. | 14 | 16 |
| 529 | 98.64 | temperature | 10 | 1440 | > th | dose dependent | rect. | 14 | 16 |
| 601 | 98.71 | temperature | 30 | 1440 | < th | dose dependent | rect. | 15 | 11 |
| 617 | 98.72 | temperature | 25 | 720 | < th | dose dependent | sin | 0 | NA |
| 661 | 98.75 | temperature | 30 | 1440 | < th | dose dependent | rect. | 15 | 9 |
| 729 | 98.80 | temperature | 10 | 1440 | > th | dose dependent | sin | 15 | NA |
| 745 | 98.81 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 985 | 99.04 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 2 |