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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0417200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Delta 12 oleic acid desaturase FAD2.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.59 (0.0426) R2 : 0.238
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.76 (0.211) R2dE : 0.126 R2E : -0.0198
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.97 (0.0924) R2dN8 : 0.258 R2N8 : 0.112
σ : 0.793
deviance : 289.72
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_____
C
peak time of C : --
E
wheather : humidity
threshold : 86.02
memory length : 1589
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
265.42 0.765 3.6 0.182 0.466 1.6 0.296 2.91 0.906 20.9 84 1628 -- --
271.57 0.768 3.61 0.377 0.679 1.76 0.257 -- 0.943 20.3 83.04 1838 -- --
265.24 0.759 3.6 0.198 0.551 1.58 -- 2.65 0.935 20.4 84.16 1729 -- --
271.9 0.768 3.62 0.379 0.677 1.76 -- -- 0.942 20.1 83.82 1838 -- --
277.53 0.776 3.59 0.171 -- 1.6 -- 2.96 0.903 -- 85 1561 -- --
313.49 0.83 3.64 0.525 0.465 -- 0.331 -- 0.816 22 -- -- -- --
313.91 0.83 3.64 0.512 0.462 -- -- -- 0.815 22 -- -- -- --
285.76 0.787 3.6 0.416 -- 1.78 -- -- 0.917 -- 83.36 1564 -- --
275.46 0.773 3.62 -- 0.67 1.79 -- -- 0.931 20.2 84.04 1836 -- --
326.79 0.845 3.63 0.517 -- -- -- -- 0.815 -- -- -- -- --
320.81 0.838 3.65 -- 0.464 -- -- -- 0.758 22.1 -- -- -- --
289.72 0.793 3.59 -- -- 1.76 -- -- 0.97 -- 86.02 1589 -- --
333.85 0.853 3.64 -- -- -- -- -- 0.758 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 266.96 humidity 70 1440 > th dose dependent rect. 22 23
4 267.07 humidity 70 1440 > th dose dependent rect. 18 23
6 267.18 humidity 70 1440 > th dose dependent rect. 13 23
7 267.21 humidity 70 1440 > th dose dependent rect. 16 23
11 267.38 humidity 70 1440 > th dose dependent rect. 5 23
14 267.40 humidity 70 1440 > th dose dependent no NA NA
22 267.47 humidity 70 1440 > th dose dependent rect. 10 23
27 267.51 humidity 70 1440 > th dose dependent rect. 2 23
175 269.10 humidity 80 1440 > th dose independent rect. 6 18
278 270.04 humidity 80 14400 > th dose independent rect. 14 2
314 270.31 humidity 80 1440 < th dose independent rect. 6 18
351 270.53 humidity 80 1440 > th dose independent rect. 13 23
355 270.54 humidity 80 1440 > th dose independent no NA NA
364 270.57 humidity 80 1440 > th dose independent rect. 10 23
399 270.73 humidity 80 1440 > th dose independent rect. 18 23
408 270.78 humidity 70 1440 > th dose dependent sin 2 NA
417 270.85 humidity 80 14400 < th dose independent rect. 14 2
418 270.85 humidity 80 1440 > th dose independent rect. 15 23
494 271.23 humidity 80 1440 > th dose independent sin 22 NA
532 271.40 humidity 80 1440 > th dose dependent rect. 13 15
644 271.91 humidity 90 1440 > th dose independent sin 16 NA
646 271.92 humidity 80 1440 < th dose independent no NA NA
659 271.97 humidity 80 1440 < th dose independent sin 22 NA
664 271.98 humidity 90 1440 > th dose independent rect. 13 13
674 272.01 humidity 80 1440 < th dose independent rect. 13 23
676 272.02 humidity 80 1440 < th dose independent rect. 18 23
677 272.02 humidity 80 14400 > th dose dependent rect. 14 1
683 272.05 humidity 80 1440 < th dose independent rect. 16 23
693 272.08 humidity 80 1440 > th dose dependent sin 16 NA
695 272.09 humidity 80 1440 < th dose independent rect. 11 23
766 272.36 humidity 90 1440 > th dose independent rect. 13 19
775 272.40 humidity 80 14400 > th dose dependent rect. 13 4
867 272.69 humidity 90 1440 < th dose independent rect. 19 1
964 273.01 humidity 90 1440 > th dose independent rect. 16 10