Os07g0414900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Transposase (Fragment).
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Os07g0414900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Transposase (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 160.68 | 0.596 | 5.55 | -2.29 | 1.15 | -1.38 | -0.295 | -0.936 | -0.0109 | 22.8 | 25.1 | 261 | -- | -- |
| 162.19 | 0.593 | 5.54 | -2.38 | 1.16 | -1.27 | -0.272 | -- | 0.000551 | 22.7 | 25.1 | 255 | -- | -- |
| 161.01 | 0.591 | 5.55 | -2.28 | 1.16 | -1.37 | -- | -0.948 | -0.00715 | 22.8 | 25.09 | 251 | -- | -- |
| 162.46 | 0.594 | 5.56 | -2.43 | 1.16 | -1.29 | -- | -- | -0.04 | 22.8 | 25.2 | 251 | -- | -- |
| 211.52 | 0.677 | 5.54 | -2.48 | -- | -1.78 | -- | -0.503 | -0.0911 | -- | 29.58 | 772 | -- | -- |
| 186.37 | 0.64 | 5.51 | -2.11 | 1.12 | -- | -0.313 | -- | 0.222 | 22.1 | -- | -- | -- | -- |
| 186.75 | 0.64 | 5.51 | -2.1 | 1.13 | -- | -- | -- | 0.223 | 22.1 | -- | -- | -- | -- |
| 211.8 | 0.678 | 5.55 | -2.57 | -- | -1.76 | -- | -- | -0.127 | -- | 29.73 | 773 | -- | -- |
| 301.06 | 0.813 | 5.46 | -- | 1.16 | -0.31 | -- | -- | 0.411 | 22.1 | 24.32 | 16 | -- | -- |
| 263.31 | 0.758 | 5.48 | -2.08 | -- | -- | -- | -- | 0.224 | -- | -- | -- | -- | -- |
| 302.6 | 0.814 | 5.45 | -- | 1.12 | -- | -- | -- | 0.456 | 22 | -- | -- | -- | -- |
| 366.17 | 0.891 | 5.45 | -- | -- | -0.821 | -- | -- | 0.352 | -- | 36.54 | 721 | -- | -- |
| 377.59 | 0.907 | 5.42 | -- | -- | -- | -- | -- | 0.455 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 152.81 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 9 | 21 |
| 2 | 152.99 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 9 | 21 |
| 38 | 158.29 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 11 | 19 |
| 51 | 159.37 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 6 | 20 |
| 55 | 159.64 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 24 | 13 |
| 58 | 159.76 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 21 |
| 59 | 159.80 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 5 | 21 |
| 65 | 159.94 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 16 | 19 |
| 66 | 159.94 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 68 | 159.99 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 3 | 23 |
| 87 | 160.37 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 21 | 23 |
| 116 | 160.74 | temperature | 25.0 | 270 | < th | dose dependent | no | NA | NA |
| 126 | 160.94 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 3 | 20 |
| 154 | 161.41 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 12 | 1 |
| 159 | 161.45 | wind | 5.0 | 43200 | > th | dose independent | rect. | 20 | 5 |
| 164 | 161.47 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 8 | 23 |
| 165 | 161.48 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 12 | 1 |
| 171 | 161.50 | temperature | 20.0 | 90 | > th | dose independent | rect. | 9 | 21 |
| 178 | 161.54 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 12 | 1 |
| 181 | 161.60 | wind | 5.0 | 43200 | < th | dose independent | rect. | 20 | 5 |
| 184 | 161.62 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 11 | 23 |
| 288 | 162.53 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 20 | 5 |
| 326 | 162.77 | temperature | 25.0 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 339 | 162.81 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 17 | 12 |
| 366 | 162.90 | temperature | 30.0 | 270 | < th | dose dependent | sin | 8 | NA |
| 393 | 163.03 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 1 | 1 |
| 409 | 163.14 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 17 | 19 |
| 410 | 163.15 | wind | 9.0 | 43200 | > th | dose independent | rect. | 16 | 8 |
| 453 | 163.36 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 22 | 3 |
| 457 | 163.38 | wind | 9.0 | 43200 | > th | dose independent | rect. | 16 | 10 |
| 466 | 163.40 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 486 | 163.46 | temperature | 15.0 | 270 | > th | dose independent | rect. | 24 | 13 |
| 487 | 163.46 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 493 | 163.49 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 16 | 8 |
| 514 | 163.57 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 16 | 10 |
| 528 | 163.59 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 544 | 163.64 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 545 | 163.65 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 550 | 163.66 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 3 | 22 |
| 575 | 163.72 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 20 | 5 |
| 576 | 163.72 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 16 | 14 |
| 597 | 163.77 | wind | 5.0 | 4320 | > th | dose independent | rect. | 22 | 3 |
| 601 | 163.78 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 1 | 2 |
| 618 | 163.82 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 1 | 4 |
| 637 | 163.88 | wind | 9.0 | 43200 | < th | dose independent | rect. | 16 | 8 |
| 645 | 163.90 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 21 | 4 |
| 653 | 163.92 | wind | 5.0 | 4320 | < th | dose independent | rect. | 22 | 3 |
| 672 | 163.97 | temperature | 20.0 | 90 | > th | dose independent | rect. | 11 | 18 |
| 683 | 164.00 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 6 | 20 |
| 704 | 164.07 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 5 | 21 |
| 707 | 164.08 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 21 | 5 |
| 717 | 164.11 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 19 | 1 |
| 757 | 164.19 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 6 | 6 |
| 766 | 164.22 | radiation | 1.0 | 90 | < th | dose dependent | sin | 4 | NA |
| 803 | 164.28 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 5 | 12 |
| 816 | 164.30 | wind | 9.0 | 43200 | < th | dose independent | rect. | 16 | 10 |
| 819 | 164.30 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 8 |
| 870 | 164.41 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 18 | 2 |
| 909 | 164.48 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 4 |
| 960 | 164.60 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 3 |
| 961 | 164.60 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 3 |
| 963 | 164.61 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 3 |
| 984 | 164.67 | temperature | 10.0 | 270 | > th | dose dependent | sin | 8 | NA |
| 989 | 164.68 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 9 | 20 |