BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0414900 Os07g0414900|AK068756
         (324 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G42170.1  | chr3:14321838-14323928 FORWARD LENGTH=697          103   1e-22
AT1G18560.1  | chr1:6385614-6388005 FORWARD LENGTH=691             51   9e-07

>AT3G42170.1 | chr3:14321838-14323928 FORWARD LENGTH=697
          Length = 696

 Score =  103 bits (257), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/271 (28%), Positives = 128/271 (47%), Gaps = 37/271 (13%)

Query: 73  RPVKRKKLTSEVWQYFNKEKVSIDENGKIYKQEWAHCKFKNCTYK-GRCESATGTSGFWS 131
           +P+KR+K  S VW++F  E  +++ N +      A CK  N ++         GTS    
Sbjct: 59  QPIKRRKKKSMVWEHFTIE--AVEPNCR-----RAFCKGCNQSFAYSNGNKVAGTS---- 107

Query: 132 HLKLHHSVVKGQ-QQLKAQKDQEKGINVVEPYKYDEEASLRKL--------YVA------ 176
           HLK H  + KG    L    D +    +  PY    +   R+         YVA      
Sbjct: 108 HLKRH--IFKGTCPALIHTHDNDNNPLMSTPYTPKTDTPRRRYRSQNNASPYVAFNQDKC 165

Query: 177 -------IIMHEYPFNMVGHEYFRDFITSLRPNFPLKSRVTVRKEILSIYMQERDKLYEY 229
                  IIMH+YP +MV H  F  F+ S++P+F   S   V+ + ++ Y+ E+  + + 
Sbjct: 166 RQEIAKMIIMHDYPLHMVQHPGFVSFVQSIQPHFDAVSFNNVQGDCVATYLAEKQNVMKS 225

Query: 230 LKTVKCRISATMDMWTSNQNKGYMCITLHWVDDDWCIQKRIVTFSHVEGRHTGVRLSEGF 289
           L+ +  R   T+D WTS    GY+ IT H++D DW IQK+++             LS   
Sbjct: 226 LEGIPGRFCLTLDFWTSKLTLGYVFITAHYIDSDWKIQKKLLNVLMESYPEADEALSLAV 285

Query: 290 TTSMLRWFVEKKMFSLTLDNASANDVAVKDI 320
              +  W +E K+F++T ++ ++N  AV++I
Sbjct: 286 ANCVSEWGLEGKLFNVTFNHPASNS-AVENI 315



>AT1G18560.1 | chr1:6385614-6388005 FORWARD LENGTH=691
          Length = 690

 Score = 50.8 bits (120), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 55/264 (20%), Positives = 100/264 (37%), Gaps = 30/264 (11%)

Query: 60  IDADVNRVDDNDERPVKRKK-LTSEVWQYFNKEKVSIDENGKIYKQEWAHCKFKNCTYKG 118
           ID  +   D ++  P KRKK +TS   +YF     S               K + C + G
Sbjct: 32  IDIGLGSSDKSNSVPPKRKKTMTSVYLKYFETAPDS---------------KTRKCKFCG 76

Query: 119 RCES-ATGTSGFWSHLKLHHS--------VVKGQ---QQLKAQKDQEKGINVVEPYKYDE 166
           +  S AT T     HL   H         VV      Q   A     +  + V    YD 
Sbjct: 77  QSYSIATATGNLGRHLTNRHPGYDKAAADVVTSSSVPQTPPAVVKPSQSQSKVPQLDYDH 136

Query: 167 EASLRKLYVAIIMHEYPFNMVGHEYFRDFITSLRPNFPLKSRVTVRKEILSIYMQERDKL 226
              L   ++A  +   P + V   +  +    L+P+  L      +  +  ++   R  +
Sbjct: 137 LNWLVLKWLA--LSSLPPSTVDETWLGNSFKFLKPSIQLWPAEKYKAILDEVFTSMRGDV 194

Query: 227 YEYLKTVKCRISATMDMWTSNQNKGYMCITLHWVDDDWCIQKRIVTFSHVEGRHTGVRLS 286
              L+ ++ ++S T+  W S +N  YM +T  W+D++W   + ++    +     G  + 
Sbjct: 195 KTTLEHIQSKVSVTLSFWNSYENIFYMSVTGQWIDENWSSHRLLLDICRIPYPSGGSEIY 254

Query: 287 EGFTTSMLRWFVEKKMFSLTLDNA 310
                 +  + +E ++   T DN+
Sbjct: 255 NSLLKVLKTYAIEDRILCCTHDNS 278



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.133    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,960,900
Number of extensions: 295055
Number of successful extensions: 831
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 830
Number of HSP's successfully gapped: 2
Length of query: 324
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 225
Effective length of database: 8,392,385
Effective search space: 1888286625
Effective search space used: 1888286625
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)