Os07g0414800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : F-actin capping protein, alpha subunit family protein.
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Os07g0414800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : F-actin capping protein, alpha subunit family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 40.21 | 0.298 | 10 | -0.572 | 1.15 | 0.0369 | -0.0359 | 4.41 | -0.157 | 4.15 | 29.84 | 1215 | -- | -- |
| 40.34 | 0.296 | 10.2 | -1.35 | 1.25 | 0.661 | 0.193 | -- | -0.293 | 4.1 | 26.96 | 1830 | -- | -- |
| 40.21 | 0.295 | 10 | -0.574 | 1.15 | 0.0396 | -- | 4.37 | -0.156 | 4.15 | 29.82 | 1229 | -- | -- |
| 40.18 | 0.295 | 10.1 | -1.37 | 1.25 | 0.689 | -- | -- | -0.253 | 4.18 | 27.5 | 1817 | -- | -- |
| 110.74 | 0.49 | 10 | -0.419 | -- | 0.107 | -- | 5.18 | -0.114 | -- | 29.67 | 1234 | -- | -- |
| 54.66 | 0.347 | 10.1 | -1.18 | 1.22 | -- | 0.112 | -- | -0.264 | 4.01 | -- | -- | -- | -- |
| 54.69 | 0.346 | 10.1 | -1.18 | 1.22 | -- | -- | -- | -0.265 | 4.01 | -- | -- | -- | -- |
| 113.21 | 0.496 | 10.2 | -1.36 | -- | 0.779 | -- | -- | -0.26 | -- | 25.83 | 2677 | -- | -- |
| 85.98 | 0.432 | 10.1 | -- | 1.2 | 0.413 | -- | -- | -0.0888 | 4.07 | 28.9 | 1857 | -- | -- |
| 135.85 | 0.545 | 10.2 | -1.13 | -- | -- | -- | -- | -0.232 | -- | -- | -- | -- | -- |
| 91.64 | 0.448 | 10.1 | -- | 1.2 | -- | -- | -- | -0.133 | 4.02 | -- | -- | -- | -- |
| 153.73 | 0.579 | 10.1 | -- | -- | -0.84 | -- | -- | -0.0872 | -- | 25.83 | 2677 | -- | -- |
| 169.77 | 0.608 | 10.1 | -- | -- | -- | -- | -- | -0.106 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 36.49 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 12 | 8 |
| 4 | 36.97 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 13 | 17 |
| 6 | 37.06 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 1 | 19 |
| 9 | 37.13 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 12 | 20 |
| 15 | 37.34 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 24 | 21 |
| 72 | 38.91 | temperature | 30.0 | 270 | < th | dose independent | rect. | 8 | 16 |
| 73 | 38.96 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 12 | 8 |
| 78 | 38.99 | temperature | 30.0 | 270 | < th | dose independent | rect. | 6 | 19 |
| 94 | 39.22 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 3 | 19 |
| 111 | 39.47 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 3 | 17 |
| 120 | 39.57 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 13 | 17 |
| 134 | 39.70 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 16 | 12 |
| 146 | 39.79 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 17 | 8 |
| 150 | 39.81 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 168 | 39.94 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 9 | 18 |
| 185 | 40.06 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 15 | 17 |
| 203 | 40.21 | humidity | 70.0 | 270 | > th | dose independent | rect. | 17 | 8 |
| 205 | 40.22 | temperature | 30.0 | 270 | < th | dose independent | rect. | 17 | 8 |
| 222 | 40.36 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 12 | 7 |
| 239 | 40.40 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 12 | 14 |
| 259 | 40.43 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 12 | 3 |
| 284 | 40.48 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 14 | 1 |
| 287 | 40.48 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 17 | 8 |
| 303 | 40.50 | temperature | 25.0 | 1440 | > th | dose dependent | sin | 18 | NA |
| 312 | 40.51 | radiation | 1.0 | 270 | < th | dose independent | rect. | 17 | 8 |
| 319 | 40.52 | wind | 1.0 | 270 | > th | dose independent | rect. | 12 | 8 |
| 321 | 40.52 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 15 | 7 |
| 327 | 40.54 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 12 | 8 |
| 331 | 40.54 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 12 | 8 |
| 338 | 40.57 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 14 | 1 |
| 351 | 40.59 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 11 | 16 |
| 369 | 40.64 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 24 | 8 |
| 372 | 40.64 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 15 | 17 |
| 421 | 40.70 | temperature | 30.0 | 1440 | > th | dose dependent | sin | 4 | NA |
| 458 | 40.73 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 496 | 40.76 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 15 | 15 |
| 510 | 40.78 | temperature | 30.0 | 1440 | > th | dose dependent | rect. | 16 | 22 |
| 511 | 40.79 | temperature | 10.0 | 270 | > th | dose dependent | sin | 19 | NA |
| 555 | 40.80 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 18 |
| 564 | 40.80 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 18 |
| 566 | 40.80 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 24 | 21 |
| 569 | 40.81 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 14 | 15 |
| 574 | 40.81 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 14 | 15 |
| 579 | 40.82 | temperature | 30.0 | 1440 | > th | dose dependent | no | NA | NA |
| 846 | 40.90 | radiation | 20.0 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 853 | 40.90 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 12 | 8 |
| 861 | 40.90 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 18 | 18 |
| 894 | 40.92 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 18 | 7 |
| 897 | 40.92 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 5 | 20 |
| 958 | 40.99 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 9 | 2 |
| 959 | 40.99 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 14 | 21 |
| 968 | 41.00 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 7 | 18 |
| 989 | 41.02 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 9 | 3 |
| 994 | 41.03 | wind | 9.0 | 270 | < th | dose independent | rect. | 12 | 8 |
| 995 | 41.03 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 24 | 8 |
| 998 | 41.03 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 24 | 8 |