BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0414800 Os07g0414800|AK108552
         (215 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G05520.2  | chr3:1598611-1601437 FORWARD LENGTH=383            299   6e-82

>AT3G05520.2 | chr3:1598611-1601437 FORWARD LENGTH=383
          Length = 382

 Score =  299 bits (766), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 135/215 (62%), Positives = 163/215 (75%)

Query: 1   DPRTAQVATVDHIKQKCTKLRPAADEELPSAYIEDFRSALDVELSKYVGEAYPKGVCAVY 60
           DPRTAQVA VDH+KQ CTK+RPA DEELPS YIE++R ALD E+ +YV E+YPKG+ AV 
Sbjct: 94  DPRTAQVAIVDHVKQICTKVRPANDEELPSLYIEEYRYALDAEIQRYVSESYPKGMSAVN 153

Query: 61  CTSGKDIEGPGVDFRFAAVISAAKRSPQNFCNGNWRSIWTLEFIDGLQLVEIKGKIQVGA 120
           C  GKD EGPG DF    +I+A + SPQNFCNG+WRS+W ++F D  Q+++IKGK+QVGA
Sbjct: 154 CVKGKDNEGPGSDFELVVIITAMRLSPQNFCNGSWRSVWNIDFQDESQVLDIKGKLQVGA 213

Query: 121 HYFEEGNVQLDTNIDCKDSTILQSPEECAVSITNIIRHHXXXXXXXXXXXXMNLSDATFK 180
           HYFEEGNV+LD   D +DSTI QS ++CA++I NIIRHH              L D TFK
Sbjct: 214 HYFEEGNVELDAKKDFQDSTIFQSADDCAIAIANIIRHHETEYLASLEVAYSKLPDNTFK 273

Query: 181 DLRRKLPVTRTLFPWHNTLALSLTRDLTKELAIGK 215
           DLRRKLPVTRTLFPW NTL  SLTR++ KEL +GK
Sbjct: 274 DLRRKLPVTRTLFPWQNTLQFSLTREVEKELGLGK 308



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.135    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,305,525
Number of extensions: 167516
Number of successful extensions: 285
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 285
Number of HSP's successfully gapped: 1
Length of query: 215
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 121
Effective length of database: 8,529,465
Effective search space: 1032065265
Effective search space used: 1032065265
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)