Os07g0412400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Adenylate kinase isoenzyme 6 (EC 2.7.4.3) (ATP-AMP transphosphorylase 6).
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Os07g0412400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Adenylate kinase isoenzyme 6 (EC 2.7.4.3) (ATP-AMP transphosphorylase 6).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 71.19 | 0.396 | 10.5 | -0.523 | 0.0182 | 2.16 | 0.861 | -0.911 | -0.208 | 16.8 | 15.38 | 96 | -- | -- |
| 71.67 | 0.394 | 10.5 | -0.399 | 0.0326 | 2.2 | 0.658 | -- | -0.185 | 17.7 | 14.8 | 99 | -- | -- |
| 71.95 | 0.395 | 10.5 | -0.448 | 0.112 | 2.25 | -- | -0.28 | -0.191 | 23 | 15.54 | 89 | -- | -- |
| 71.93 | 0.395 | 10.5 | -0.411 | 0.138 | 2.27 | -- | -- | -0.186 | 22.6 | 15.2 | 78 | -- | -- |
| 72.74 | 0.397 | 10.5 | -0.432 | -- | 2.22 | -- | -0.236 | -0.182 | -- | 15.18 | 94 | -- | -- |
| 124.16 | 0.522 | 10.4 | 0.058 | 0.627 | -- | 0.971 | -- | 0.143 | 15.9 | -- | -- | -- | -- |
| 126.86 | 0.527 | 10.4 | 0.0707 | 0.631 | -- | -- | -- | 0.148 | 15.8 | -- | -- | -- | -- |
| 72.78 | 0.397 | 10.4 | -0.398 | -- | 2.22 | -- | -- | -0.174 | -- | 15.04 | 95 | -- | -- |
| 75.83 | 0.406 | 10.4 | -- | 0.144 | 2.03 | -- | -- | -0.119 | 20.8 | 15.91 | 72 | -- | -- |
| 148.79 | 0.57 | 10.4 | 0.0446 | -- | -- | -- | -- | 0.132 | -- | -- | -- | -- | -- |
| 126.99 | 0.527 | 10.4 | -- | 0.629 | -- | -- | -- | 0.141 | 15.8 | -- | -- | -- | -- |
| 76.64 | 0.408 | 10.4 | -- | -- | 2.03 | -- | -- | -0.103 | -- | 15.79 | 93 | -- | -- |
| 148.85 | 0.569 | 10.4 | -- | -- | -- | -- | -- | 0.127 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 68.62 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 8 | 71.26 | temperature | 15 | 90 | > th | dose dependent | no | NA | NA |
| 11 | 71.65 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 14 | 71.95 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 23 |
| 28 | 72.68 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 36 | 73.17 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 43 | 73.28 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 50 | 73.72 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 58 | 74.15 | temperature | 20 | 90 | > th | dose dependent | rect. | 8 | 23 |
| 60 | 74.26 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 62 | 74.31 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 64 | 74.46 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 75 | 74.65 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 86 | 75.15 | temperature | 20 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 111 | 75.75 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 122 | 76.02 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 149 | 76.61 | temperature | 20 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 161 | 76.93 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 181 | 77.17 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 10 |
| 182 | 77.18 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 197 | 77.31 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 198 | 77.32 | temperature | 15 | 720 | > th | dose dependent | rect. | 22 | 18 |
| 201 | 77.35 | temperature | 20 | 1440 | > th | dose independent | rect. | 19 | 11 |
| 213 | 77.45 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 14 |
| 218 | 77.48 | temperature | 15 | 1440 | > th | dose dependent | rect. | 20 | 9 |
| 229 | 77.51 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 236 | 77.53 | temperature | 20 | 720 | > th | dose dependent | rect. | 20 | 17 |
| 268 | 77.67 | temperature | 15 | 1440 | > th | dose dependent | rect. | 20 | 13 |
| 288 | 77.73 | temperature | 25 | 1440 | < th | dose dependent | sin | 11 | NA |
| 292 | 77.74 | temperature | 15 | 1440 | > th | dose dependent | rect. | 20 | 6 |
| 342 | 77.88 | temperature | 20 | 1440 | < th | dose independent | rect. | 19 | 11 |
| 396 | 78.03 | temperature | 15 | 1440 | > th | dose dependent | sin | 10 | NA |
| 489 | 78.25 | temperature | 20 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 530 | 78.37 | temperature | 20 | 1440 | > th | dose independent | sin | 11 | NA |
| 533 | 78.37 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 550 | 78.41 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 638 | 78.59 | temperature | 15 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 669 | 78.66 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 721 | 78.79 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 733 | 78.82 | temperature | 15 | 720 | > th | dose dependent | sin | 4 | NA |
| 764 | 78.87 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 4 |
| 771 | 78.89 | temperature | 15 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 786 | 78.92 | temperature | 15 | 1440 | > th | dose dependent | rect. | 23 | 1 |
| 862 | 79.06 | temperature | 20 | 1440 | < th | dose independent | sin | 11 | NA |
| 973 | 79.24 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 1 |