BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0412400 Os07g0412400|AK102184
         (180 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G60340.1  | chr5:24275098-24275891 REVERSE LENGTH=179          229   6e-61

>AT5G60340.1 | chr5:24275098-24275891 REVERSE LENGTH=179
          Length = 178

 Score =  229 bits (584), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 109/178 (61%), Positives = 136/178 (76%), Gaps = 1/178 (0%)

Query: 1   MASRGGG-ARRTRPNVLVXXXXXXXXXXXCSLLADAVDLRHINIGDLVREKSLHDGWDEE 59
           MA R  G  RR RPN+L+            S LA+A +LR+I IGDLV+EK  + GWD E
Sbjct: 1   MARRNRGVTRRERPNLLITGTPGTGKSTTASALAEATNLRYICIGDLVKEKEFYHGWDNE 60

Query: 60  LECHIINEDLVCDELEDVMEEGGILVDYHGCDFFPERWFDLVVVLQTDNSILHDRLTSRG 119
           LECH INED V DEL+D M EGG +VDYHGCDFFP+RWFD VVVL+T+NS+L+DRLT+RG
Sbjct: 61  LECHFINEDSVIDELDDAMIEGGNIVDYHGCDFFPQRWFDRVVVLRTENSVLYDRLTNRG 120

Query: 120 YMGAKLTNNIECEIFQMLLEEARESYKEEIVMPLRSDNVEDISRNVGTLTEWINNWRP 177
           Y G KL+NN++CE++Q+LLEEA +SY EEIV  L+S+ +EDIS NV TLT+WIN W+P
Sbjct: 121 YSGTKLSNNLQCEMYQVLLEEAHDSYDEEIVTELQSNTIEDISNNVSTLTDWINAWQP 178



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.138    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,949,043
Number of extensions: 162233
Number of successful extensions: 385
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 385
Number of HSP's successfully gapped: 1
Length of query: 180
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 88
Effective length of database: 8,584,297
Effective search space: 755418136
Effective search space used: 755418136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 108 (46.2 bits)