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Os07g0412100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Granule-bound starch synthase Ib, chloroplast precursor (EC 2.4.1.21) (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.2 (0.0458) R2 : 0.822
β1 : -2.3 (0.167) R2dD : 0.0769 R2D : 0.0411
β2 : 3.96 (0.121) R2dC : 0.483 R2C : 0.601
β3 : -1.69 (0.124) R2dE : 0.0829 R2E : 0.22
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.24 (0.0976) R2dN8 : 0.0857 R2N8 : 0.0384
σ : 0.855
deviance : 337.02
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C
peak time of C : 9.05
E
wheather : humidity
threshold : 73.1
memory length : 920
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 15.8
open length of G : 3.47

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
331.22 0.855 13.2 -2.44 3.7 -1.79 2.05 0.467 -1.19 8.97 72 802 15.9 3.32
331.66 0.848 13.2 -2.4 3.73 -1.77 1.76 -- -1.19 8.96 72.12 809 15.9 3.34
338.62 0.857 13.2 -2.32 3.96 -1.66 -- -0.41 -1.23 9.01 72.03 920 15.7 3.62
337.02 0.855 13.2 -2.3 3.96 -1.69 -- -- -1.24 9.05 73.1 920 15.8 3.47
455.62 0.994 13.3 -2.1 -- -3.86 -- 0.081 -1.36 -- 11.92 671 13.6 5.52
427.4 0.969 13.2 -2.31 4.56 -- 1.66 -- -1.27 9.71 -- -- -- --
437.76 0.98 13.2 -2.25 4.55 -- -- -- -1.27 9.72 -- -- -- --
448.44 0.986 13.4 -2.24 -- -3.88 -- -- -1.33 -- 2.534 666 13.4 5.97
468.63 1.01 13.2 -- 4.1 -1.64 -- -- -1.02 9.18 75.47 924 16 3.52
1668.04 1.91 13.3 -2.29 -- -- -- -- -1.26 -- -- -- -- --
570.62 1.12 13.1 -- 4.55 -- -- -- -1.02 9.76 -- -- -- --
578.42 1.12 13.3 -- -- -3.95 -- -- -1.06 -- 38 685 13.1 6.23
1806.02 1.98 13.3 -- -- -- -- -- -1.01 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 336.89 humidity 60 720 > th dose dependent rect. 18 1
2 339.30 humidity 70 720 > th dose dependent rect. 18 3
14 346.51 humidity 50 720 > th dose dependent rect. 16 10
16 346.84 humidity 70 720 > th dose independent rect. 16 3
26 348.27 humidity 90 720 < th dose dependent rect. 19 2
36 349.03 humidity 90 720 < th dose independent rect. 19 5
42 349.57 humidity 70 720 > th dose independent rect. 15 13
43 349.58 humidity 70 720 > th dose independent rect. 16 5
78 351.44 humidity 90 720 > th dose independent rect. 20 1
81 351.55 humidity 60 720 > th dose dependent sin 16 NA
85 351.83 humidity 70 720 > th dose independent rect. 18 1
102 352.91 humidity 80 720 < th dose independent rect. 12 10
151 355.38 humidity 90 720 < th dose dependent rect. 17 7
171 356.34 humidity 90 720 < th dose dependent rect. 15 9
215 357.39 humidity 80 720 > th dose independent rect. 12 9
218 357.58 humidity 70 720 > th dose independent sin 13 NA
221 357.67 humidity 90 720 > th dose independent rect. 20 3
294 359.51 humidity 90 720 < th dose dependent sin 15 NA
336 360.32 humidity 70 720 < th dose independent sin 14 NA
416 361.94 radiation 10 1440 < th dose dependent rect. 13 11
424 362.05 radiation 10 1440 < th dose dependent rect. 13 14
425 362.06 radiation 10 1440 < th dose dependent rect. 13 7
481 362.63 radiation 10 1440 < th dose dependent sin 18 NA
506 363.02 radiation 10 1440 < th dose independent rect. 15 1
530 363.42 humidity 90 720 < th dose dependent rect. 15 16
585 364.13 radiation 10 1440 < th dose dependent rect. 11 13
594 364.22 radiation 10 1440 < th dose dependent rect. 11 16
595 364.23 radiation 10 1440 < th dose dependent rect. 11 9
671 364.85 radiation 10 1440 < th dose dependent rect. 11 20
676 364.90 humidity 80 720 < th dose independent sin 18 NA
723 365.21 radiation 10 720 < th dose independent rect. 14 5
758 365.41 radiation 10 1440 < th dose independent rect. 15 9
777 365.57 radiation 10 1440 < th dose independent rect. 15 12
817 365.78 humidity 70 1440 > th dose independent rect. 11 16
902 366.49 humidity 80 1440 > th dose independent rect. 6 11
969 366.98 humidity 70 1440 > th dose independent rect. 15 22
971 367.00 temperature 20 30 > th dose independent rect. 18 8