Os07g0297300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0297300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 174.32 | 0.62 | 4.35 | 0.715 | 0.427 | 2.16 | 0.467 | 0.842 | -0.498 | 8.92 | 23.55 | 95 | -- | -- |
| 174.72 | 0.616 | 4.37 | 0.591 | 0.43 | 2.22 | 0.473 | -- | -0.535 | 8.92 | 23.59 | 94 | -- | -- |
| 174.8 | 0.616 | 4.36 | 0.722 | 0.417 | 2.22 | -- | 0.888 | -0.508 | 8.25 | 23.54 | 83 | -- | -- |
| 175.25 | 0.617 | 4.37 | 0.589 | 0.427 | 2.3 | -- | -- | -0.548 | 8.03 | 23.56 | 83 | -- | -- |
| 180.33 | 0.629 | 4.37 | 0.784 | -- | 2.21 | -- | 1.24 | -0.512 | -- | 23.03 | 48 | -- | -- |
| 254.41 | 0.748 | 4.31 | 0.978 | 0.9 | -- | 1.53 | -- | -0.242 | 14 | -- | -- | -- | -- |
| 263.32 | 0.76 | 4.31 | 1.02 | 0.899 | -- | -- | -- | -0.234 | 13.8 | -- | -- | -- | -- |
| 181.38 | 0.63 | 4.39 | 0.604 | -- | 2.29 | -- | -- | -0.565 | -- | 23.09 | 44 | -- | -- |
| 183.82 | 0.631 | 4.39 | -- | 0.454 | 2.43 | -- | -- | -0.64 | 7.77 | 23.27 | 89 | -- | -- |
| 312.37 | 0.826 | 4.32 | 0.987 | -- | -- | -- | -- | -0.254 | -- | -- | -- | -- | -- |
| 290.95 | 0.798 | 4.33 | -- | 0.88 | -- | -- | -- | -0.348 | 13.8 | -- | -- | -- | -- |
| 190.59 | 0.645 | 4.41 | -- | -- | 2.4 | -- | -- | -0.665 | -- | 22.55 | 48 | -- | -- |
| 338.07 | 0.858 | 4.34 | -- | -- | -- | -- | -- | -0.363 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 173.23 | temperature | 25 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 2 | 175.75 | temperature | 25 | 90 | > th | dose dependent | rect. | 7 | 22 |
| 11 | 176.52 | temperature | 25 | 90 | > th | dose dependent | no | NA | NA |
| 18 | 176.68 | temperature | 25 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 22 | 176.75 | temperature | 25 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 63 | 178.22 | temperature | 25 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 127 | 179.41 | temperature | 25 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 228 | 181.06 | temperature | 25 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 253 | 181.46 | temperature | 25 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 341 | 182.59 | temperature | 25 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 462 | 184.28 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 6 |
| 479 | 184.49 | temperature | 25 | 720 | > th | dose dependent | rect. | 23 | 13 |
| 512 | 184.87 | temperature | 25 | 720 | > th | dose dependent | sin | 7 | NA |
| 529 | 185.13 | temperature | 20 | 720 | > th | dose dependent | sin | 3 | NA |
| 559 | 185.72 | temperature | 15 | 270 | > th | dose dependent | sin | 0 | NA |
| 590 | 185.97 | temperature | 20 | 90 | > th | dose dependent | sin | 22 | NA |
| 614 | 186.22 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 18 |
| 629 | 186.38 | temperature | 10 | 720 | > th | dose dependent | sin | 3 | NA |
| 761 | 188.12 | temperature | 10 | 720 | > th | dose dependent | rect. | 24 | 17 |
| 789 | 188.44 | temperature | 20 | 10 | > th | dose dependent | sin | 21 | NA |
| 915 | 189.50 | temperature | 30 | 270 | < th | dose independent | rect. | 9 | 23 |
| 957 | 189.89 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |