BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0297300 Os07g0297300|Os07g0297300
         (544 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G64600.1  | chr1:23995996-23998625 FORWARD LENGTH=538          514   e-146
AT5G37830.1  | chr5:15056635-15060525 REVERSE LENGTH=1267          73   4e-13

>AT1G64600.1 | chr1:23995996-23998625 FORWARD LENGTH=538
          Length = 537

 Score =  514 bits (1323), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 265/510 (51%), Positives = 336/510 (65%), Gaps = 48/510 (9%)

Query: 9   TAPRLLTPETIRAAAKQSQGIQLVPLSLRRAIKRYLRDQDKAHMNRKVLQLSASFERAKG 68
            A ++ T ET+R+A+KQ     +VP+ LRRAIK+YLR++D  H+ +KV QLS SF+  K 
Sbjct: 3   NAQKVFTVETLRSASKQCLRCLVVPVRLRRAIKKYLREEDDPHIRKKVRQLSESFQEIKD 62

Query: 69  TGTELAAAAMRGALIDDPRAPSGAEQRAARWKVRSAYGDIGLRYREDETVAYVASRMPAI 128
           T  +L     +        A S       RWK+++ YGD GL+YR+ ET AY+ASRMPA+
Sbjct: 63  TNLQLPETTAKSL------ADSMNSLETKRWKIQTVYGDSGLQYRDGETAAYIASRMPAV 116

Query: 129 YAACHRVLREVRRRLPDFAPAKVLDFGAGPSSALWAMRAVWPKSIEKVNLVEPSKEMQRA 188
           ++ C+RVL E+RRR+P F P +VLDFGAG  S  WA++ VWPKS+EKVN+VEPS+ MQRA
Sbjct: 117 FSVCYRVLIEIRRRVPGFTPTRVLDFGAGTGSGFWAVKEVWPKSVEKVNIVEPSQSMQRA 176

Query: 189 GKNLLDNLKGLPLIHSYDSIQELNRNI-EKHERRHDLVISSYALGEIPSLNDRITIVRQL 247
           G+NL+  LK LPLIH Y S+  LN+ I +K ER+HDLVI+SY LGEIPSL DRIT+VRQL
Sbjct: 177 GRNLIQGLKDLPLIHGYTSLLALNKEINKKSERKHDLVIASYVLGEIPSLKDRITVVRQL 236

Query: 248 WDLTGDVLKCRKIEKSTRAAP---SEMKSIVC-------------------QEASLKNGA 285
           WDLT D+L    +E  T       S+M+S +                    +   LK+GA
Sbjct: 237 WDLTDDLLVL--VEPGTPHGANIISQMRSHILWMEKRKLRKLEKKMKKDGKEVLDLKSGA 294

Query: 286 FVVAPCPHDGRCPLENTDKYCHFVQRLERTSSQRAYKRSNGVPLRGFEDEKFCYVALRRG 345
            +VAPCPHDG+CPLENT KYCHFVQRL+RTSSQR+YKR+ GVPLRGFEDEKFC+VA RRG
Sbjct: 295 HIVAPCPHDGKCPLENTGKYCHFVQRLQRTSSQRSYKRTKGVPLRGFEDEKFCFVAFRRG 354

Query: 346 KRPEEAWPLDGMKFETLKERHAKRNPEDLIIDYDEQFPSEEDEEAPVNAEDCLVPYDSDA 405
           +RP E WPLDGMK ETLKER A + PEDL IDY++   S+  E   ++       YDSD 
Sbjct: 355 QRPRELWPLDGMKLETLKERRANKKPEDLEIDYEDFIKSQVVEVPYIDPR----AYDSDT 410

Query: 406 QXXXXXXXX-------------XXXXXXQSVRADLGGGWGRIIYSPIRRGRQVQLDVCRA 452
                                       +S RA +GGGWGRII+ P R+G+QV LD+C  
Sbjct: 411 MDENEEEQEDGGGTDEDEEDKIEEEIEEESERASVGGGWGRIIFPPFRKGKQVTLDMCVP 470

Query: 453 TKRDASEGAFERVVITQSKNPTMHHQARST 482
           TK D SEGAFER VIT+SKNP +H QA+ +
Sbjct: 471 TKEDGSEGAFERRVITKSKNPDLHLQAKKS 500



>AT5G37830.1 | chr5:15056635-15060525 REVERSE LENGTH=1267
          Length = 1266

 Score = 72.8 bits (177), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 33/60 (55%), Positives = 44/60 (73%), Gaps = 3/60 (5%)

Query: 485 FRFCIDRGGTFTNIHTELPGRREGYENEASLRRPVQLRVYDDAPIEGIRRILEEFSGEKI 544
            RFCIDRGGTFT+++ E+PG  +G+  +     P     YDDAP+EGIRRILEE++G+KI
Sbjct: 9   LRFCIDRGGTFTDVYAEIPGHSDGHVLKLLSVDPSN---YDDAPVEGIRRILEEYTGKKI 65



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.134    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,563,792
Number of extensions: 490953
Number of successful extensions: 1267
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1261
Number of HSP's successfully gapped: 2
Length of query: 544
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 441
Effective length of database: 8,282,721
Effective search space: 3652679961
Effective search space used: 3652679961
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 114 (48.5 bits)