Os07g0255200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Helicase-like protein [Oryza sativa (japonica cultivar-group)].
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Os07g0255200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Helicase-like protein [Oryza sativa (japonica cultivar-group)].
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 90.98 | 0.448 | 7.53 | 0.0093 | 0.557 | 0.624 | -0.64 | 1.12 | 0.319 | 4.73 | 14.49 | 5328 | -- | -- |
| 91.63 | 0.446 | 7.57 | -0.21 | 0.553 | 0.487 | -0.608 | -- | 0.252 | 4.66 | 19.65 | 5500 | -- | -- |
| 91.88 | 0.446 | 7.53 | 0.0244 | 0.57 | 0.609 | -- | 1.13 | 0.329 | 4.47 | 14.31 | 4995 | -- | -- |
| 92.53 | 0.448 | 7.57 | -0.206 | 0.551 | 0.483 | -- | -- | 0.254 | 4.39 | 19.5 | 5551 | -- | -- |
| 107.94 | 0.484 | 7.53 | 0.0132 | -- | 0.69 | -- | 1.18 | 0.327 | -- | 14.51 | 5503 | -- | -- |
| 98.08 | 0.464 | 7.55 | 0.0304 | 0.581 | -- | -0.536 | -- | 0.368 | 4.49 | -- | -- | -- | -- |
| 98.78 | 0.465 | 7.55 | 0.0338 | 0.576 | -- | -- | -- | 0.371 | 4.26 | -- | -- | -- | -- |
| 108.69 | 0.486 | 7.57 | -0.217 | -- | 0.537 | -- | -- | 0.262 | -- | 19.6 | 5518 | -- | -- |
| 93.17 | 0.45 | 7.56 | -- | 0.535 | 0.381 | -- | -- | 0.333 | 4.51 | 24 | 5416 | -- | -- |
| 116.67 | 0.505 | 7.55 | 0.0568 | -- | -- | -- | -- | 0.386 | -- | -- | -- | -- | -- |
| 98.81 | 0.465 | 7.55 | -- | 0.576 | -- | -- | -- | 0.367 | 4.26 | -- | -- | -- | -- |
| 109.05 | 0.486 | 7.56 | -- | -- | 0.446 | -- | -- | 0.351 | -- | 24.6 | 5517 | -- | -- |
| 116.75 | 0.504 | 7.55 | -- | -- | -- | -- | -- | 0.38 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 87.03 | temperature | 15.0 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 4 | 87.08 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 4 | 1 |
| 5 | 87.08 | wind | 3.0 | 4320 | > th | dose dependent | rect. | 24 | 2 |
| 8 | 87.16 | radiation | 30.0 | 4320 | > th | dose independent | rect. | 15 | 17 |
| 13 | 87.26 | radiation | 30.0 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 50 | 87.78 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 15 | 2 |
| 51 | 87.78 | temperature | 20.0 | 14400 | < th | dose dependent | rect. | 5 | 14 |
| 55 | 87.84 | radiation | 10.0 | 14400 | > th | dose independent | rect. | 10 | 2 |
| 58 | 87.87 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 23 | 7 |
| 60 | 87.90 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 15 | 2 |
| 62 | 87.90 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 9 | 6 |
| 63 | 87.91 | radiation | 10.0 | 4320 | > th | dose independent | rect. | 17 | 13 |
| 71 | 87.98 | temperature | 20.0 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 72 | 87.99 | temperature | 20.0 | 14400 | < th | dose dependent | rect. | 16 | 3 |
| 86 | 88.07 | radiation | 10.0 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 101 | 88.09 | temperature | 20.0 | 14400 | < th | dose dependent | sin | 0 | NA |
| 110 | 88.14 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 11 | 2 |
| 128 | 88.21 | wind | 1.0 | 14400 | < th | dose independent | rect. | 1 | 4 |
| 171 | 88.35 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 2 | 6 |
| 209 | 88.44 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 212 | 88.46 | wind | 5.0 | 4320 | < th | dose independent | rect. | 24 | 2 |
| 225 | 88.48 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 227 | 88.48 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 230 | 88.50 | wind | 1.0 | 14400 | > th | dose independent | rect. | 1 | 4 |
| 244 | 88.55 | wind | 5.0 | 4320 | > th | dose independent | rect. | 24 | 2 |
| 249 | 88.57 | temperature | 20.0 | 14400 | < th | dose dependent | rect. | 6 | 4 |
| 259 | 88.61 | temperature | 20.0 | 14400 | < th | dose dependent | rect. | 9 | 10 |
| 280 | 88.67 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 18 | 14 |
| 307 | 88.77 | temperature | 20.0 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 323 | 88.82 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 4 | 1 |
| 326 | 88.83 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 10 | 3 |
| 328 | 88.83 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 10 | 3 |
| 348 | 88.89 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 362 | 88.92 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 364 | 88.92 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 373 | 88.94 | wind | 7.0 | 4320 | < th | dose independent | rect. | 21 | 6 |
| 379 | 88.97 | wind | 7.0 | 4320 | > th | dose independent | rect. | 21 | 6 |
| 383 | 88.98 | temperature | 15.0 | 14400 | > th | dose independent | rect. | 20 | 11 |
| 392 | 89.01 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 21 | 6 |
| 393 | 89.01 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 8 | 12 |
| 396 | 89.01 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 8 | 16 |
| 398 | 89.01 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 8 | 19 |
| 421 | 89.04 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 10 | 3 |
| 422 | 89.04 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 10 | 3 |
| 423 | 89.04 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 21 | 4 |
| 456 | 89.09 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 1 | 3 |
| 479 | 89.13 | temperature | 15.0 | 14400 | > th | dose independent | sin | 8 | NA |
| 500 | 89.15 | wind | 7.0 | 4320 | > th | dose independent | rect. | 21 | 4 |
| 510 | 89.16 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 14 | 1 |
| 526 | 89.18 | temperature | 20.0 | 14400 | < th | dose dependent | rect. | 8 | 18 |
| 535 | 89.20 | wind | 1.0 | 14400 | < th | dose independent | rect. | 2 | 6 |
| 540 | 89.21 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 24 | 6 |
| 541 | 89.21 | wind | 1.0 | 43200 | > th | dose independent | rect. | 22 | 10 |
| 548 | 89.22 | temperature | 20.0 | 14400 | < th | dose dependent | no | NA | NA |
| 564 | 89.23 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 20 | 10 |
| 575 | 89.24 | temperature | 20.0 | 14400 | < th | dose dependent | rect. | 8 | 23 |
| 576 | 89.24 | temperature | 20.0 | 14400 | < th | dose dependent | rect. | 12 | 23 |
| 583 | 89.25 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 3 | 15 |
| 585 | 89.25 | temperature | 20.0 | 14400 | < th | dose dependent | rect. | 12 | 1 |
| 587 | 89.25 | temperature | 20.0 | 14400 | < th | dose dependent | rect. | 14 | 23 |
| 593 | 89.26 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 3 | 15 |
| 624 | 89.30 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 1 | 2 |
| 685 | 89.34 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 756 | 89.40 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 18 | 11 |
| 790 | 89.42 | wind | 1.0 | 14400 | > th | dose independent | rect. | 2 | 6 |
| 800 | 89.43 | radiation | 10.0 | 14400 | > th | dose independent | sin | 1 | NA |
| 854 | 89.45 | wind | 5.0 | 1440 | > th | dose dependent | rect. | 24 | 8 |
| 855 | 89.45 | wind | 5.0 | 1440 | > th | dose dependent | rect. | 23 | 10 |
| 917 | 89.50 | wind | 5.0 | 1440 | < th | dose independent | rect. | 24 | 8 |
| 931 | 89.51 | radiation | 10.0 | 14400 | < th | dose dependent | sin | 21 | NA |
| 937 | 89.52 | wind | 5.0 | 1440 | > th | dose independent | rect. | 23 | 10 |
| 949 | 89.53 | wind | 5.0 | 1440 | > th | dose independent | rect. | 24 | 8 |