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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0250100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.38 (0.0451) R2 : 0.163
β1 : 0.457 (0.165) R2dD : 0.0184 R2D : -0.0223
β2 : -- (--) R2dC : -- R2C : --
β3 : 14.3 (1.77) R2dE : 0.946 R2E : -0.545
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 44.2 (6.68) R2dD*E : 0.643 R2D*E : -0.829
γ1 : -0.363 (0.0934) R2dN8 : 0.0374 R2N8 : 0.0246
σ : 0.816
deviance : 306.83
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_____
C
peak time of C : --
E
wheather : wind
threshold : 7.059
memory length : 89
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 12.1
open length of G : 2.81

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
302.91 0.818 3.39 0.476 0.209 13.9 0.581 43 -0.366 11.5 7.006 89 12 2.94
344.61 0.871 3.31 0.182 0.293 1.54 0.674 -- -0.335 12.9 7.006 89 12 2.94
304.31 0.812 3.39 0.501 0.21 14 -- 43.8 -0.365 11 7 89 12 2.91
331.85 0.848 3.3 0.232 0.271 2.72 -- -- -0.336 13.3 6.694 105 12.2 2.64
306.83 0.816 3.38 0.457 -- 14.3 -- 44.2 -0.363 -- 7.059 89 12.1 2.81
347.5 0.874 3.31 0.157 0.31 -- 0.604 -- -0.344 12.9 -- -- -- --
349.03 0.875 3.31 0.179 0.309 -- -- -- -0.341 12.9 -- -- -- --
333.98 0.851 3.31 0.263 -- 3.47 -- -- -0.323 -- 6.656 105 12.1 2.66
332.59 0.849 3.31 -- 0.252 3.07 -- -- -0.351 12.5 6.6 112 12.2 2.63
354.96 0.88 3.32 0.167 -- -- -- -- -0.347 -- -- -- -- --
349.87 0.875 3.32 -- 0.306 -- -- -- -0.361 12.9 -- -- -- --
335.72 0.853 3.31 -- -- 3.42 -- -- -0.35 -- 6.603 112 12.2 2.63
355.7 0.88 3.32 -- -- -- -- -- -0.365 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 304.00 wind 7 90 > th dose independent rect. 12 3
3 306.75 wind 7 90 > th dose dependent rect. 12 3
8 314.43 wind 7 10 > th dose dependent rect. 13 4
45 320.14 radiation 30 30 > th dose independent rect. 15 17
48 320.50 wind 7 10 > th dose dependent rect. 13 1
95 322.81 radiation 30 30 > th dose dependent rect. 15 18
99 323.18 atmosphere 1000 90 < th dose independent rect. 5 11
104 323.87 atmosphere 1005 720 > th dose independent rect. 24 1
110 324.38 atmosphere 1000 90 < th dose dependent rect. 4 12
125 325.05 radiation 30 30 > th dose independent rect. 15 1
153 325.50 radiation 30 30 > th dose dependent rect. 15 1
170 325.55 atmosphere 1005 270 < th dose dependent rect. 3 5
174 325.65 atmosphere 1000 90 < th dose independent rect. 13 3
177 325.89 atmosphere 1000 90 < th dose dependent rect. 23 17
179 325.90 atmosphere 1000 90 < th dose dependent rect. 21 19
187 326.10 atmosphere 1005 720 < th dose dependent rect. 23 7
188 326.10 atmosphere 1005 720 < th dose dependent rect. 22 9
190 326.12 atmosphere 1005 270 < th dose dependent rect. 5 2
202 326.28 atmosphere 1000 90 < th dose dependent rect. 1 15
210 326.40 atmosphere 1005 720 < th dose dependent rect. 1 5
224 326.64 atmosphere 1005 1440 > th dose independent rect. 20 1
226 326.65 atmosphere 1000 10 < th dose independent rect. 14 2
231 326.76 atmosphere 1005 10 < th dose dependent rect. 4 6
236 326.85 atmosphere 1000 90 < th dose independent rect. 14 1
240 326.86 temperature 30 30 > th dose independent rect. 16 1
272 327.07 atmosphere 1005 1440 > th dose independent rect. 20 5
289 327.15 atmosphere 1005 720 < th dose independent rect. 24 1
338 327.59 atmosphere 1000 4320 < th dose dependent rect. 5 2
351 327.65 atmosphere 1005 270 < th dose dependent sin 6 NA
366 327.77 atmosphere 1005 720 < th dose dependent sin 9 NA
456 328.36 temperature 25 10 < th dose dependent rect. 8 2
496 328.61 atmosphere 1000 90 < th dose dependent sin 3 NA
546 328.93 atmosphere 1005 10 < th dose dependent sin 4 NA
550 328.95 atmosphere 1000 90 < th dose independent rect. 21 19
572 329.04 humidity 50 720 > th dose dependent rect. 23 6
713 329.48 atmosphere 1005 1440 < th dose independent rect. 19 2
717 329.50 atmosphere 1005 720 > th dose independent rect. 20 13
724 329.51 atmosphere 1005 1440 < th dose dependent rect. 15 1
754 329.60 atmosphere 1000 1440 < th dose dependent rect. 2 12
795 329.71 atmosphere 1000 4320 < th dose dependent sin 8 NA
848 329.82 atmosphere 1005 1440 < th dose independent rect. 18 7
859 329.84 humidity 80 720 > th dose dependent rect. 24 3
884 329.91 atmosphere 1005 720 > th dose independent sin 10 NA
892 329.92 radiation 10 10 < th dose independent rect. 14 1
909 329.95 atmosphere 1005 720 > th dose independent rect. 21 10
917 329.96 atmosphere 1005 720 < th dose independent rect. 19 12
947 330.03 wind 5 30 > th dose dependent rect. 13 21
948 330.04 wind 7 10 > th dose independent rect. 13 16