BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0250100 Os07g0250100|Os07g0250100
         (96 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G51760.1  | chr1:19199562-19201424 FORWARD LENGTH=441           49   5e-07
AT5G56650.1  | chr5:22930825-22932488 FORWARD LENGTH=439           49   6e-07
AT5G56660.1  | chr5:22933278-22935011 FORWARD LENGTH=440           47   2e-06

>AT1G51760.1 | chr1:19199562-19201424 FORWARD LENGTH=441
          Length = 440

 Score = 48.9 bits (115), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/56 (48%), Positives = 37/56 (66%), Gaps = 7/56 (12%)

Query: 32  EEEDSDALLRQFRAKLDTIGVPYQWPVARTGGVG----GDGPIIALREDMDALLVQ 83
           EE ++  L+R   A+L+ +GV Y++PVA TG VG    G  P +ALR DMDAL +Q
Sbjct: 64  EEVETSKLVR---AELEKMGVSYKYPVAVTGVVGYVGTGHAPFVALRADMDALAMQ 116



>AT5G56650.1 | chr5:22930825-22932488 FORWARD LENGTH=439
          Length = 438

 Score = 48.9 bits (115), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 24/46 (52%), Positives = 33/46 (71%), Gaps = 4/46 (8%)

Query: 44  RAKLDTIGVPYQWPVARTGGVG----GDGPIIALREDMDALLVQSS 85
           R++LD IGV Y++PVA TG +G    G+ P +ALR DMDAL +Q +
Sbjct: 75  RSELDLIGVKYRFPVAITGIIGYIGTGEPPFVALRADMDALPIQEA 120



>AT5G56660.1 | chr5:22933278-22935011 FORWARD LENGTH=440
          Length = 439

 Score = 46.6 bits (109), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/56 (44%), Positives = 38/56 (67%), Gaps = 7/56 (12%)

Query: 32  EEEDSDALLRQFRAKLDTIGVPYQWPVARTGGVG----GDGPIIALREDMDALLVQ 83
           EE ++  L+R   ++L+ IG+ Y++PVA TG +G    G+ P +ALR DMDAL +Q
Sbjct: 67  EELETSKLIR---SELELIGIKYRYPVAITGVIGYIGTGEPPFVALRADMDALPIQ 119



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.315    0.134    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,066,051
Number of extensions: 80893
Number of successful extensions: 273
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 277
Number of HSP's successfully gapped: 3
Length of query: 96
Length of database: 11,106,569
Length adjustment: 66
Effective length of query: 30
Effective length of database: 9,297,113
Effective search space: 278913390
Effective search space used: 278913390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 104 (44.7 bits)