Os07g0223700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0223700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 49.65 | 0.331 | 6.3 | 0.243 | 0.496 | 0.113 | -0.136 | 1.03 | 0.196 | 5.44 | 1014 | 6434 | -- | -- |
| 55.27 | 0.346 | 6.33 | -0.046 | 0.515 | 0.115 | 0.0168 | -- | 0.135 | 5.35 | 1014 | 17949 | -- | -- |
| 49.69 | 0.328 | 6.3 | 0.24 | 0.495 | 0.115 | -- | 1.03 | 0.196 | 5.44 | 1014 | 6416 | -- | -- |
| 54.46 | 0.344 | 6.33 | -0.0371 | 0.489 | 0.189 | -- | -- | 0.126 | 5.35 | 1014 | 4481 | -- | -- |
| 62.22 | 0.367 | 6.3 | 0.276 | -- | 0.127 | -- | 1.03 | 0.214 | -- | 1015 | 7853 | -- | -- |
| 55.74 | 0.35 | 6.33 | -0.024 | 0.495 | -- | -0.0977 | -- | 0.152 | 5.43 | -- | -- | -- | -- |
| 55.77 | 0.35 | 6.33 | -0.0243 | 0.495 | -- | -- | -- | 0.153 | 5.43 | -- | -- | -- | -- |
| 66.64 | 0.38 | 6.34 | -0.00845 | -- | 0.253 | -- | -- | 0.145 | -- | 1014 | 4182 | -- | -- |
| 54.44 | 0.344 | 6.33 | -- | 0.494 | 0.203 | -- | -- | 0.127 | 5.36 | 1014 | 4360 | -- | -- |
| 68.5 | 0.387 | 6.34 | -0.00769 | -- | -- | -- | -- | 0.165 | -- | -- | -- | -- | -- |
| 55.78 | 0.349 | 6.33 | -- | 0.494 | -- | -- | -- | 0.155 | 5.43 | -- | -- | -- | -- |
| 66.63 | 0.38 | 6.34 | -- | -- | 0.255 | -- | -- | 0.135 | -- | 1014 | 4214 | -- | -- |
| 68.5 | 0.386 | 6.34 | -- | -- | -- | -- | -- | 0.166 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 48.18 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 21 | 4 |
| 2 | 48.31 | wind | 5.0 | 4320 | < th | dose independent | rect. | 20 | 5 |
| 3 | 48.34 | wind | 5.0 | 4320 | > th | dose independent | rect. | 20 | 6 |
| 9 | 48.73 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 13 | 48.81 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 21 | 49.02 | wind | 7.0 | 1440 | < th | dose independent | rect. | 21 | 12 |
| 23 | 49.08 | wind | 7.0 | 1440 | < th | dose independent | rect. | 24 | 9 |
| 25 | 49.10 | wind | 7.0 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 28 | 49.15 | wind | 7.0 | 1440 | > th | dose independent | rect. | 24 | 9 |
| 31 | 49.28 | wind | 3.0 | 4320 | > th | dose dependent | rect. | 19 | 7 |
| 35 | 49.37 | wind | 1.0 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 41 | 49.49 | wind | 5.0 | 1440 | > th | dose independent | rect. | 20 | 14 |
| 46 | 49.58 | wind | 5.0 | 1440 | > th | dose dependent | rect. | 20 | 14 |
| 51 | 49.64 | wind | 5.0 | 1440 | < th | dose independent | rect. | 20 | 14 |
| 55 | 49.68 | wind | 7.0 | 1440 | > th | dose dependent | rect. | 24 | 9 |
| 60 | 49.72 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 61 | 49.74 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 63 | 49.74 | humidity | 80.0 | 4320 | < th | dose independent | rect. | 7 | 3 |
| 70 | 49.79 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 73 | 49.79 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 81 | 49.85 | wind | 7.0 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 87 | 49.89 | humidity | 80.0 | 4320 | > th | dose independent | rect. | 7 | 3 |
| 95 | 49.93 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 21 | 3 |
| 114 | 50.04 | wind | 5.0 | 4320 | < th | dose independent | rect. | 24 | 1 |
| 132 | 50.07 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 133 | 50.08 | humidity | 50.0 | 4320 | < th | dose independent | rect. | 13 | 3 |
| 141 | 50.12 | humidity | 80.0 | 4320 | < th | dose independent | rect. | 21 | 14 |
| 147 | 50.14 | wind | 5.0 | 1440 | > th | dose independent | sin | 9 | NA |
| 151 | 50.15 | wind | 7.0 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 175 | 50.23 | wind | 5.0 | 4320 | > th | dose independent | rect. | 24 | 1 |
| 182 | 50.26 | wind | 5.0 | 1440 | < th | dose independent | sin | 9 | NA |
| 189 | 50.27 | humidity | 80.0 | 4320 | > th | dose independent | rect. | 21 | 14 |
| 200 | 50.29 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 10 | 19 |
| 203 | 50.29 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 19 | 20 |
| 252 | 50.32 | atmosphere | 1015.0 | 4320 | < th | dose independent | no | NA | NA |
| 253 | 50.32 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 257 | 50.32 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 20 | 18 |
| 276 | 50.32 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 2 | 23 |
| 279 | 50.32 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 24 | 23 |
| 281 | 50.32 | humidity | 70.0 | 4320 | > th | dose dependent | rect. | 7 | 2 |
| 296 | 50.33 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 9 | 21 |
| 322 | 50.34 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 19 | 11 |
| 362 | 50.35 | atmosphere | 1015.0 | 4320 | > th | dose independent | no | NA | NA |
| 390 | 50.35 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 2 | 23 |
| 393 | 50.35 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 24 | 23 |
| 427 | 50.36 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 13 | 23 |
| 431 | 50.36 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 432 | 50.37 | atmosphere | 1015.0 | 4320 | < th | dose independent | sin | 10 | NA |
| 435 | 50.37 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 475 | 50.37 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 22 | 13 |
| 517 | 50.38 | atmosphere | 1015.0 | 4320 | > th | dose dependent | sin | 8 | NA |
| 520 | 50.39 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 20 | 10 |
| 541 | 50.40 | atmosphere | 1015.0 | 4320 | > th | dose independent | sin | 9 | NA |
| 554 | 50.40 | humidity | 80.0 | 4320 | > th | dose independent | rect. | 23 | 12 |
| 556 | 50.40 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 18 | 13 |
| 592 | 50.40 | humidity | 60.0 | 4320 | > th | dose dependent | rect. | 4 | 6 |
| 593 | 50.40 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 24 | 7 |
| 606 | 50.41 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 18 | 13 |
| 637 | 50.41 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 22 | 11 |
| 680 | 50.42 | humidity | 90.0 | 4320 | < th | dose dependent | rect. | 3 | 7 |
| 718 | 50.43 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 1 | 4 |
| 852 | 50.47 | humidity | 50.0 | 4320 | < th | dose dependent | rect. | 14 | 2 |
| 913 | 50.49 | humidity | 90.0 | 4320 | < th | dose dependent | rect. | 7 | 1 |
| 928 | 50.50 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 997 | 50.52 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 2 | 1 |
| 998 | 50.52 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 2 | 3 |