BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0223700 Os07g0223700|Os07g0223700
(258 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G55535.1 | chr1:20732081-20733802 REVERSE LENGTH=261 242 2e-64
AT3G13420.1 | chr3:4364723-4365892 FORWARD LENGTH=243 186 1e-47
>AT1G55535.1 | chr1:20732081-20733802 REVERSE LENGTH=261
Length = 260
Score = 242 bits (617), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 129/241 (53%), Positives = 175/241 (72%), Gaps = 9/241 (3%)
Query: 21 RLRSFLRDYDALQSLALALIYLQIGCALIGSLGALFNGVLVINLVIGLFAVVAIESSSQT 80
R+ +LRDY LQSLA+ LIY QIGCALIGSLGAL+NGVL+INL I LFA+VAIES+SQ+
Sbjct: 10 RIHPWLRDYVKLQSLAVFLIYAQIGCALIGSLGALYNGVLLINLAIALFALVAIESNSQS 69
Query: 81 LGRTYAVLLFFAIVLDVAWFILFSHAIWNITPEEKYGQLFVLSLKLALWMQIIGFSVRFL 140
LGRTYAVLLF A++LD++WFILF+ IW+I+ E YG F+ S+KL + M++IGF VR
Sbjct: 70 LGRTYAVLLFCALLLDISWFILFTEEIWSIS-AETYGTFFIFSVKLTMAMEMIGFFVRLS 128
Query: 141 SSFIWIQMYRLG---VSSSTPTYHEVNYDGRNSFLSPRSSSV-RRNSMADDILGGSIYDP 196
SS +W Q+YRLG V +S P E + D RNSFL+P + ++ R+ S A++ILGGSIYDP
Sbjct: 129 SSLLWFQIYRLGAAIVDTSLP--RETDSDLRNSFLNPPTPAIARQCSGAEEILGGSIYDP 186
Query: 197 AYYSSLFADVRNNTCTHQGDK--QSGSNDSGSTSAGQSPRLKSFASRSFVANDVEAGLRR 254
AYY+SLF + + N + + + + ++GS SA ++ +KS RS + D E GL++
Sbjct: 187 AYYTSLFEESQTNINSPKATQVNHYSAGNNGSPSAAEASHIKSPIFRSLHSIDEEKGLKK 246
Query: 255 P 255
P
Sbjct: 247 P 247
>AT3G13420.1 | chr3:4364723-4365892 FORWARD LENGTH=243
Length = 242
Score = 186 bits (471), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 107/210 (50%), Positives = 138/210 (65%), Gaps = 21/210 (10%)
Query: 14 LGIGIGPRLRSFLRDYDALQSLALALIYLQIGCALIGSLGALFNGVLVINLVIGLFAVVA 73
L + + R+ ++LRDY LQS+ L LIY QIGCALIGSLGAL+NGV++INL I LF +VA
Sbjct: 2 LCVSLRNRIHNWLRDYVRLQSVVLILIYAQIGCALIGSLGALYNGVVLINLAIALFGLVA 61
Query: 74 IESSSQTLGRTYAVLLFFAIVLDVAWFILFSHAIWNITPEEKYGQLFVLSLKLALWMQII 133
IES+SQ+LGRTYAVLLF AI+LDV+WFILFS IWNI+ + Y ++ S+KL L M+I
Sbjct: 62 IESNSQSLGRTYAVLLFCAILLDVSWFILFSKEIWNIS-SDMYQVFYIFSVKLTLAMEIA 120
Query: 134 GFSVRFLSSFIWIQMYRLGVS-SSTPTYHEVNYDGRNSFLSP--------RSSSVR---- 180
GF VR SS +W Q+YRLG S +P + + D RNSFL P R +R
Sbjct: 121 GFVVRLSSSLLWFQIYRLGASIIDSPFPRQSDSDLRNSFLEPPLLARQRSRDPELRNSFL 180
Query: 181 -------RNSMADDILGGSIYDPAYYSSLF 203
+ S +D+IL SI +PA Y+ L
Sbjct: 181 QAPAIAKQRSRSDEILEDSIDEPASYTPLL 210
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.137 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,157,276
Number of extensions: 209498
Number of successful extensions: 609
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 603
Number of HSP's successfully gapped: 2
Length of query: 258
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 162
Effective length of database: 8,474,633
Effective search space: 1372890546
Effective search space used: 1372890546
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 110 (47.0 bits)