FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0222000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Alpha-amylase/trypsin inhibitor (RBI) (RATI).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.76 (0.0206) R2 : 0.283
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 4.7 (0.358) R2dE : 0.272 R2E : 0.277
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0775 (0.0434) R2dN8 : 0.00651 R2N8 : 0.0107
σ : 0.386
deviance : 68.8
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 32.56
memory length : 4
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 15
open length of G : 7.38

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
68.92 0.39 2.77 0.0523 0.0509 4.27 -0.149 -0.41 0.0656 0.748 31.96 4 15 6.22
68.48 0.385 2.76 0.0604 0.0442 4.76 -0.136 -- 0.0819 0.369 32.54 6 15 7.51
67.93 0.384 2.78 0.132 0.0155 8.31 -- 7.98 0.0629 19.1 32.99 4 15 1.14
68.53 0.386 2.76 0.0657 0.0492 4.73 -- -- 0.0841 22.5 32.56 4 15 7.3
67.83 0.384 2.78 0.113 -- 8.96 -- 9.47 0.08 -- 33.04 8 15 5.69
93.95 0.454 2.75 -0.0189 0.107 -- -0.322 -- 0.123 17.8 -- -- -- --
94.2 0.455 2.75 -0.0168 0.105 -- -- -- 0.121 17.9 -- -- -- --
68.68 0.386 2.76 0.0668 -- 4.73 -- -- 0.085 -- 32.57 4 15 7.31
68.65 0.386 2.76 -- 0.0503 4.7 -- -- 0.0769 22.5 32.55 6 15 7.61
94.78 0.455 2.75 -0.02 -- -- -- -- 0.119 -- -- -- -- --
94.21 0.454 2.75 -- 0.106 -- -- -- 0.123 17.9 -- -- -- --
68.8 0.386 2.76 -- -- 4.7 -- -- 0.0775 -- 32.56 4 15 7.38
94.79 0.454 2.75 -- -- -- -- -- 0.121 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 71.49 radiation 30 10 > th dose dependent rect. 15 1
18 71.56 radiation 30 30 > th dose independent rect. 15 1
271 74.09 wind 1 90 < th dose dependent rect. 15 1
287 74.44 humidity 60 10 < th dose independent rect. 15 1
310 75.13 humidity 70 30 < th dose dependent rect. 14 2
356 76.11 wind 1 90 < th dose independent rect. 15 1
400 76.72 wind 3 10 < th dose dependent rect. 16 1
483 77.42 wind 3 10 < th dose independent rect. 16 1
548 77.82 humidity 60 10 < th dose independent sin 13 NA
564 78.07 humidity 60 90 < th dose independent sin 13 NA
572 78.39 humidity 60 10 > th dose independent sin 12 NA
592 78.53 humidity 60 10 < th dose dependent sin 12 NA
614 78.77 humidity 60 90 > th dose independent sin 13 NA
641 79.24 radiation 30 10 < th dose independent sin 13 NA
657 79.58 atmosphere 1005 10 < th dose dependent rect. 16 1
671 79.61 atmosphere 1005 90 < th dose dependent rect. 14 1
720 79.77 radiation 20 10 > th dose independent sin 13 NA
799 80.20 humidity 60 30 < th dose dependent rect. 12 4