Os07g0206700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cycloartenol-C-24-methyltransferase 1 (EC 2.1.1.41) (24-sterol C- methyltransferase 1) (Sterol C-methyltransferase 1).
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Os07g0206700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cycloartenol-C-24-methyltransferase 1 (EC 2.1.1.41) (24-sterol C- methyltransferase 1) (Sterol C-methyltransferase 1).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 107.21 | 0.486 | 12.5 | -1.42 | 1.37 | 1.14 | -0.0066 | -2.45 | -0.59 | 7.62 | 25.54 | 1200 | -- | -- |
| 108.97 | 0.486 | 12.4 | -0.808 | 1.49 | 1.03 | 0.149 | -- | -0.487 | 7.73 | 24.86 | 1037 | -- | -- |
| 106.92 | 0.482 | 12.5 | -1.47 | 1.43 | 1.22 | -- | -2.7 | -0.647 | 7.67 | 25.03 | 1114 | -- | -- |
| 108.85 | 0.486 | 12.4 | -0.822 | 1.45 | 0.988 | -- | -- | -0.461 | 7.67 | 25.1 | 1068 | -- | -- |
| 207.74 | 0.671 | 12.4 | -0.822 | -- | 0.787 | -- | -0.025 | -0.472 | -- | 23.68 | 2825 | -- | -- |
| 137.62 | 0.55 | 12.4 | -0.547 | 1.34 | -- | 0.0259 | -- | -0.372 | 7.12 | -- | -- | -- | -- |
| 137.62 | 0.549 | 12.4 | -0.546 | 1.34 | -- | -- | -- | -0.372 | 7.12 | -- | -- | -- | -- |
| 204.3 | 0.666 | 12.5 | -0.892 | -- | 0.832 | -- | -- | -0.598 | -- | 23.45 | 7088 | -- | -- |
| 125.37 | 0.521 | 12.4 | -- | 1.34 | 0.701 | -- | -- | -0.305 | 7.52 | 26.5 | 1202 | -- | -- |
| 231.88 | 0.712 | 12.4 | -0.521 | -- | -- | -- | -- | -0.349 | -- | -- | -- | -- | -- |
| 145.49 | 0.564 | 12.4 | -- | 1.33 | -- | -- | -- | -0.311 | 7.15 | -- | -- | -- | -- |
| 218.25 | 0.688 | 12.4 | -- | -- | 0.682 | -- | -- | -0.335 | -- | 25.4 | 1331 | -- | -- |
| 239.03 | 0.722 | 12.4 | -- | -- | -- | -- | -- | -0.291 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 98.68 | temperature | 20 | 270 | > th | dose dependent | rect. | 16 | 17 |
| 13 | 102.12 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 9 |
| 23 | 102.43 | temperature | 25 | 720 | > th | dose dependent | sin | 14 | NA |
| 24 | 102.44 | temperature | 25 | 90 | > th | dose independent | rect. | 17 | 16 |
| 26 | 102.53 | temperature | 15 | 270 | > th | dose dependent | rect. | 15 | 9 |
| 68 | 103.81 | temperature | 25 | 270 | > th | dose independent | rect. | 15 | 17 |
| 96 | 104.56 | temperature | 20 | 30 | > th | dose dependent | sin | 10 | NA |
| 106 | 104.86 | temperature | 20 | 10 | > th | dose dependent | rect. | 18 | 16 |
| 160 | 106.15 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 4 |
| 165 | 106.22 | humidity | 60 | 720 | > th | dose dependent | rect. | 17 | 4 |
| 187 | 106.54 | humidity | 60 | 720 | > th | dose dependent | rect. | 16 | 6 |
| 207 | 106.80 | temperature | 25 | 270 | > th | dose independent | rect. | 15 | 9 |
| 230 | 107.19 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 15 |
| 249 | 107.43 | temperature | 25 | 720 | < th | dose independent | rect. | 17 | 5 |
| 287 | 107.89 | humidity | 90 | 720 | < th | dose dependent | rect. | 15 | 8 |
| 299 | 107.97 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 13 |
| 312 | 108.03 | temperature | 25 | 90 | > th | dose independent | rect. | 17 | 10 |
| 330 | 108.16 | temperature | 25 | 720 | < th | dose independent | rect. | 17 | 3 |
| 334 | 108.19 | temperature | 25 | 720 | < th | dose independent | rect. | 19 | 1 |
| 338 | 108.23 | radiation | 1 | 720 | < th | dose independent | sin | 14 | NA |
| 355 | 108.37 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 15 |
| 370 | 108.52 | radiation | 1 | 720 | > th | dose independent | sin | 15 | NA |
| 392 | 108.73 | temperature | 30 | 10 | < th | dose dependent | rect. | 14 | 16 |
| 418 | 108.93 | radiation | 1 | 720 | < th | dose dependent | sin | 15 | NA |
| 450 | 109.15 | temperature | 25 | 90 | > th | dose independent | sin | 11 | NA |
| 461 | 109.26 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 8 |
| 468 | 109.28 | humidity | 70 | 720 | > th | dose independent | sin | 12 | NA |
| 528 | 109.60 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 6 |
| 548 | 109.66 | temperature | 10 | 30 | > th | dose dependent | sin | 10 | NA |
| 588 | 109.86 | humidity | 50 | 720 | > th | dose dependent | sin | 16 | NA |
| 604 | 109.92 | humidity | 90 | 720 | < th | dose dependent | rect. | 15 | 17 |
| 613 | 110.00 | temperature | 30 | 30 | < th | dose dependent | sin | 10 | NA |
| 620 | 110.03 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 9 |
| 660 | 110.19 | temperature | 10 | 720 | > th | dose dependent | sin | 18 | NA |
| 683 | 110.27 | radiation | 1 | 720 | < th | dose independent | rect. | 17 | 9 |
| 727 | 110.44 | humidity | 90 | 270 | < th | dose independent | rect. | 15 | 8 |
| 733 | 110.46 | radiation | 1 | 43200 | < th | dose dependent | rect. | 19 | 5 |
| 742 | 110.49 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 758 | 110.57 | radiation | 30 | 1440 | < th | dose independent | rect. | 2 | 6 |
| 760 | 110.57 | temperature | 10 | 270 | > th | dose dependent | sin | 13 | NA |
| 815 | 110.76 | humidity | 70 | 720 | < th | dose independent | rect. | 15 | 17 |
| 831 | 110.81 | humidity | 80 | 720 | > th | dose dependent | rect. | 9 | 14 |
| 875 | 110.94 | temperature | 30 | 720 | < th | dose independent | rect. | 16 | 15 |
| 881 | 110.96 | humidity | 80 | 1440 | < th | dose independent | sin | 2 | NA |
| 895 | 111.01 | radiation | 1 | 720 | > th | dose independent | rect. | 8 | 22 |
| 908 | 111.05 | humidity | 90 | 720 | < th | dose dependent | sin | 15 | NA |
| 953 | 111.17 | humidity | 70 | 720 | < th | dose independent | rect. | 15 | 5 |
| 976 | 111.18 | temperature | 25 | 1440 | > th | dose dependent | rect. | 21 | 21 |
| 980 | 111.19 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 19 |
| 983 | 111.20 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 12 |