Os07g0196200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0196200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 45.91 | 0.318 | 14.6 | -0.458 | 0.373 | 0.788 | -0.404 | 0.541 | -0.376 | 1.77 | 21.7 | 4455 | -- | -- |
| 46.19 | 0.317 | 14.6 | -0.611 | 0.349 | 0.823 | -0.388 | -- | -0.42 | 1.7 | 21.64 | 4439 | -- | -- |
| 46.53 | 0.318 | 14.6 | -0.453 | 0.378 | 0.788 | -- | 0.523 | -0.377 | 1.95 | 21.76 | 4490 | -- | -- |
| 46.57 | 0.318 | 14.6 | -0.574 | 0.387 | 0.805 | -- | -- | -0.374 | 2.02 | 23 | 4516 | -- | -- |
| 53.93 | 0.342 | 14.6 | -0.452 | -- | 0.839 | -- | 0.507 | -0.378 | -- | 21.78 | 4065 | -- | -- |
| 65.82 | 0.38 | 14.5 | -0.271 | 0.413 | -- | -0.361 | -- | -0.269 | 1.83 | -- | -- | -- | -- |
| 66.32 | 0.381 | 14.5 | -0.26 | 0.414 | -- | -- | -- | -0.267 | 1.94 | -- | -- | -- | -- |
| 53.85 | 0.342 | 14.6 | -0.554 | -- | 0.83 | -- | -- | -0.441 | -- | 21.52 | 2521 | -- | -- |
| 53.88 | 0.342 | 14.6 | -- | 0.379 | 0.656 | -- | -- | -0.274 | 2.05 | 24.49 | 4518 | -- | -- |
| 76.64 | 0.409 | 14.5 | -0.243 | -- | -- | -- | -- | -0.258 | -- | -- | -- | -- | -- |
| 68.1 | 0.386 | 14.5 | -- | 0.409 | -- | -- | -- | -0.238 | 1.93 | -- | -- | -- | -- |
| 60.92 | 0.364 | 14.6 | -- | -- | 0.674 | -- | -- | -0.343 | -- | 22.4 | 2509 | -- | -- |
| 78.2 | 0.413 | 14.5 | -- | -- | -- | -- | -- | -0.231 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 44.97 | temperature | 20 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 25 | 45.46 | temperature | 20 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 53 | 45.59 | temperature | 20 | 4320 | > th | dose dependent | sin | 13 | NA |
| 94 | 45.76 | temperature | 25 | 4320 | < th | dose independent | rect. | 16 | 17 |
| 121 | 45.83 | temperature | 25 | 4320 | > th | dose independent | rect. | 16 | 17 |
| 143 | 45.89 | temperature | 25 | 4320 | < th | dose independent | sin | 7 | NA |
| 151 | 45.92 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 15 |
| 176 | 45.97 | temperature | 25 | 4320 | < th | dose independent | rect. | 23 | 14 |
| 177 | 45.97 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 15 |
| 179 | 45.97 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 18 |
| 186 | 45.99 | temperature | 25 | 4320 | > th | dose independent | sin | 7 | NA |
| 188 | 46.00 | temperature | 25 | 4320 | > th | dose independent | rect. | 23 | 12 |
| 196 | 46.01 | temperature | 25 | 4320 | < th | dose independent | rect. | 23 | 12 |
| 245 | 46.06 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 9 |
| 252 | 46.08 | temperature | 25 | 4320 | > th | dose independent | sin | 12 | NA |
| 259 | 46.08 | temperature | 10 | 4320 | > th | dose dependent | rect. | 17 | 9 |
| 399 | 46.21 | temperature | 10 | 4320 | > th | dose dependent | sin | 15 | NA |
| 438 | 46.24 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 497 | 46.28 | temperature | 25 | 4320 | < th | dose independent | rect. | 1 | 9 |
| 535 | 46.31 | temperature | 20 | 4320 | > th | dose dependent | no | NA | NA |
| 599 | 46.36 | temperature | 20 | 4320 | > th | dose dependent | rect. | 23 | 23 |
| 614 | 46.37 | temperature | 20 | 4320 | > th | dose dependent | rect. | 3 | 23 |
| 622 | 46.38 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 2 |
| 765 | 46.48 | temperature | 10 | 4320 | > th | dose dependent | rect. | 23 | 2 |
| 779 | 46.49 | temperature | 20 | 1440 | > th | dose dependent | rect. | 12 | 2 |
| 793 | 46.50 | temperature | 30 | 4320 | < th | dose dependent | rect. | 23 | 1 |
| 812 | 46.51 | temperature | 30 | 4320 | < th | dose dependent | sin | 14 | NA |
| 836 | 46.52 | temperature | 25 | 4320 | < th | dose independent | rect. | 22 | 23 |
| 849 | 46.53 | temperature | 25 | 4320 | < th | dose independent | no | NA | NA |
| 902 | 46.55 | temperature | 10 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 918 | 46.56 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 931 | 46.56 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 16 |