BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0196200 Os07g0196200|AK070765
         (245 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G23890.1  | chr4:12420593-12421345 REVERSE LENGTH=251          194   5e-50

>AT4G23890.1 | chr4:12420593-12421345 REVERSE LENGTH=251
          Length = 250

 Score =  194 bits (492), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 105/187 (56%), Positives = 125/187 (66%), Gaps = 4/187 (2%)

Query: 33  FRVADLLGGRGLCNGEVGIRKELXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVDPDAFD 92
           F + +++GGRGLCNGE GI KEL                              V  D F+
Sbjct: 53  FNLWEVMGGRGLCNGEKGIEKELQRNIEDEQETSKAENNETERESDDSNLSFKVPEDGFE 112

Query: 93  KEMMGLTGGFPGGEVGLKDFVAKNPPPPKPAH--RKG--LAAAATVERPRAPELPLFLPG 148
           KEMMGLTGGFPGGE GLK F+ KNPPPP P    ++G   +A AT ++P+AP+LPL +PG
Sbjct: 113 KEMMGLTGGFPGGEKGLKTFIEKNPPPPPPPPPAKQGSDASAVATDKKPKAPKLPLLMPG 172

Query: 149 MVVLVKNPNNAYHMYCGIVQRVTDGKVGVLFEGGIWDRLITFDLDELEGREKGPPMVNPK 208
           M+ +VKN N+ YHMYCGIVQR+TDGK GVLFEGG WDRLITF L+ELE REKGPP  NPK
Sbjct: 173 MIAIVKNQNSPYHMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPGKNPK 232

Query: 209 SVLLESL 215
           S +LE L
Sbjct: 233 SCILEPL 239



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.142    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,399,161
Number of extensions: 174394
Number of successful extensions: 560
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 555
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 149
Effective length of database: 8,474,633
Effective search space: 1262720317
Effective search space used: 1262720317
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 110 (47.0 bits)