Os07g0190600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Helicase.
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Os07g0190600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Helicase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 60.1 | 0.364 | 3.12 | 1.17 | 0.113 | 0.669 | 0.222 | -5.27 | 0.249 | 8.96 | 29.6 | 1789 | -- | -- |
| 62.5 | 0.368 | 3.2 | 0.531 | 0.206 | 0.56 | 0.0166 | -- | 0.221 | 8.63 | 19.2 | 7780 | -- | -- |
| 60.25 | 0.362 | 3.12 | 1.16 | 0.116 | 0.658 | -- | -5.16 | 0.245 | 8.42 | 29.63 | 1790 | -- | -- |
| 61.86 | 0.366 | 3.21 | 0.502 | 0.153 | 0.524 | -- | -- | 0.208 | 7.23 | 19 | 7980 | -- | -- |
| 60.87 | 0.363 | 3.12 | 1.18 | -- | 0.664 | -- | -5.05 | 0.276 | -- | 29.56 | 1824 | -- | -- |
| 63.47 | 0.373 | 3.24 | 0.14 | 0.157 | -- | 0.132 | -- | 0.083 | 7.82 | -- | -- | -- | -- |
| 63.51 | 0.373 | 3.24 | 0.143 | 0.159 | -- | -- | -- | 0.0825 | 7.54 | -- | -- | -- | -- |
| 62.93 | 0.369 | 3.22 | 0.416 | -- | 0.404 | -- | -- | 0.176 | -- | 19 | 7805 | -- | -- |
| 63.8 | 0.374 | 3.24 | -- | 0.163 | 0.0935 | -- | -- | 0.0761 | 7.86 | 19 | 7980 | -- | -- |
| 64.86 | 0.376 | 3.24 | 0.146 | -- | -- | -- | -- | 0.085 | -- | -- | -- | -- | -- |
| 64.06 | 0.374 | 3.24 | -- | 0.16 | -- | -- | -- | 0.0666 | 7.48 | -- | -- | -- | -- |
| 64.88 | 0.375 | 3.25 | -- | -- | 0.222 | -- | -- | 0.055 | -- | 12.5 | 6015 | -- | -- |
| 65.42 | 0.378 | 3.25 | -- | -- | -- | -- | -- | 0.0689 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 52.15 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 2 | 52.30 | wind | 3.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 3 | 52.30 | wind | 5.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 4 | 52.31 | temperature | 25.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 8 | 52.34 | wind | 9.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 9 | 52.34 | temperature | 10.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 12 | 52.34 | humidity | 50.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 16 | 52.34 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 17 | 52.34 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 19 | 52.34 | radiation | 1.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 24 | 52.34 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 2 | 1 |
| 25 | 52.34 | temperature | 10.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 26 | 52.34 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 31 | 52.34 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 35 | 52.37 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 36 | 52.38 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 40 | 52.43 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 41 | 52.48 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 44 | 52.53 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 47 | 52.60 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 88 | 53.09 | wind | 1.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 100 | 53.65 | wind | 9.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 108 | 56.21 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 117 | 57.98 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 3 | 23 |
| 118 | 57.98 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 130 | 58.76 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 131 | 58.81 | humidity | 90.0 | 90 | < th | dose independent | rect. | 2 | 1 |
| 138 | 59.13 | wind | 3.0 | 30 | < th | dose dependent | rect. | 24 | 3 |
| 143 | 59.24 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 157 | 59.53 | wind | 1.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 163 | 59.61 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 164 | 59.63 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 166 | 59.64 | temperature | 15.0 | 720 | > th | dose independent | rect. | 7 | 8 |
| 170 | 59.65 | wind | 5.0 | 14400 | < th | dose independent | rect. | 11 | 5 |
| 175 | 59.68 | wind | 5.0 | 14400 | > th | dose independent | rect. | 10 | 7 |
| 179 | 59.69 | wind | 5.0 | 14400 | > th | dose independent | rect. | 11 | 5 |
| 181 | 59.70 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 182 | 59.71 | wind | 9.0 | 4320 | < th | dose independent | rect. | 3 | 1 |
| 193 | 59.77 | atmosphere | 1015.0 | 720 | < th | dose independent | rect. | 3 | 8 |
| 206 | 59.84 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 210 | 59.84 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 219 | 59.84 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 220 | 59.84 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 242 | 59.84 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 4 | 23 |
| 245 | 59.84 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 258 | 59.86 | temperature | 15.0 | 720 | > th | dose independent | rect. | 3 | 16 |
| 288 | 59.88 | radiation | 10.0 | 10 | < th | dose independent | rect. | 3 | 23 |
| 296 | 59.91 | wind | 9.0 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 298 | 59.92 | humidity | 50.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 304 | 59.94 | humidity | 90.0 | 720 | < th | dose independent | rect. | 24 | 1 |
| 314 | 59.96 | temperature | 15.0 | 720 | > th | dose independent | rect. | 15 | 16 |
| 317 | 59.97 | wind | 3.0 | 14400 | > th | dose dependent | rect. | 10 | 6 |
| 326 | 60.01 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 11 | 5 |
| 338 | 60.03 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 11 | 5 |
| 343 | 60.04 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 14 | 4 |
| 344 | 60.04 | temperature | 15.0 | 720 | > th | dose independent | rect. | 3 | 8 |
| 348 | 60.04 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 2 | 7 |
| 371 | 60.07 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 3 | 1 |
| 381 | 60.08 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 11 | 10 |
| 393 | 60.08 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 394 | 60.08 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 7 | 8 |
| 434 | 60.09 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 24 | 15 |
| 464 | 60.10 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 10 | 4 |
| 570 | 60.13 | temperature | 30.0 | 14400 | < th | dose independent | sin | 16 | NA |
| 573 | 60.13 | temperature | 25.0 | 720 | > th | dose independent | rect. | 3 | 6 |
| 593 | 60.13 | temperature | 25.0 | 14400 | > th | dose dependent | sin | 3 | NA |
| 630 | 60.14 | temperature | 25.0 | 14400 | > th | dose dependent | sin | 1 | NA |
| 643 | 60.15 | temperature | 30.0 | 14400 | > th | dose independent | sin | 15 | NA |
| 650 | 60.15 | atmosphere | 1015.0 | 720 | < th | dose independent | rect. | 3 | 16 |
| 780 | 60.18 | wind | 5.0 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 868 | 60.19 | atmosphere | 995.0 | 720 | > th | dose independent | rect. | 23 | 16 |
| 899 | 60.19 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 8 | 17 |
| 935 | 60.20 | temperature | 25.0 | 14400 | > th | dose dependent | no | NA | NA |