Os07g0185300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function YGGT family protein.
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Os07g0185300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function YGGT family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.17 | 0.226 | 13.7 | 1.06 | 0.661 | 0.26 | -0.0885 | 1.4 | -0.163 | 16.9 | 106.8 | 7359 | -- | -- |
| 25.96 | 0.237 | 13.7 | 0.973 | 0.69 | 0.325 | -0.0566 | -- | -0.191 | 16.8 | 83.16 | 7315 | -- | -- |
| 23.19 | 0.224 | 13.7 | 1.06 | 0.661 | 0.261 | -- | 1.4 | -0.163 | 16.9 | 157.4 | 7353 | -- | -- |
| 25.86 | 0.237 | 13.7 | 0.962 | 0.653 | 0.337 | -- | -- | -0.179 | 16.9 | 82 | 7375 | -- | -- |
| 33.28 | 0.269 | 13.7 | 0.914 | -- | 0.846 | -- | -0.188 | -0.168 | -- | 96 | 324 | -- | -- |
| 27.55 | 0.246 | 13.7 | 0.898 | 0.661 | -- | -0.0962 | -- | -0.127 | 16.9 | -- | -- | -- | -- |
| 27.57 | 0.246 | 13.7 | 0.898 | 0.66 | -- | -- | -- | -0.127 | 16.9 | -- | -- | -- | -- |
| 33.12 | 0.268 | 13.7 | 0.868 | -- | 0.809 | -- | -- | -0.153 | -- | 97 | 320 | -- | -- |
| 42.58 | 0.304 | 13.7 | -- | 0.637 | 0.594 | -- | -- | -0.153 | 16.3 | 68.39 | 926 | -- | -- |
| 50.53 | 0.332 | 13.7 | 0.874 | -- | -- | -- | -- | -0.144 | -- | -- | -- | -- | -- |
| 48.83 | 0.327 | 13.7 | -- | 0.644 | -- | -- | -- | -0.227 | 17 | -- | -- | -- | -- |
| 51.58 | 0.335 | 13.7 | -- | -- | 0.834 | -- | -- | -0.215 | -- | 82.56 | 352 | -- | -- |
| 70.68 | 0.392 | 13.7 | -- | -- | -- | -- | -- | -0.241 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.11 | temperature | 25 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 19 | 22.33 | temperature | 25 | 14400 | < th | dose dependent | rect. | 7 | 11 |
| 34 | 22.37 | temperature | 20 | 14400 | < th | dose independent | rect. | 20 | 2 |
| 39 | 22.39 | temperature | 20 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 56 | 22.42 | temperature | 25 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 58 | 22.43 | temperature | 25 | 14400 | < th | dose dependent | rect. | 17 | 3 |
| 63 | 22.44 | temperature | 25 | 14400 | < th | dose dependent | sin | 22 | NA |
| 173 | 22.61 | temperature | 25 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 174 | 22.61 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 206 | 22.65 | temperature | 25 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 248 | 22.71 | humidity | 90 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 283 | 22.75 | temperature | 20 | 14400 | > th | dose independent | rect. | 11 | 11 |
| 291 | 22.76 | temperature | 25 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 309 | 22.78 | temperature | 25 | 14400 | < th | dose independent | rect. | 10 | 4 |
| 323 | 22.78 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 340 | 22.79 | temperature | 10 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 364 | 22.82 | humidity | 90 | 14400 | < th | dose independent | rect. | 17 | 2 |
| 392 | 22.84 | temperature | 25 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 400 | 22.85 | temperature | 20 | 14400 | > th | dose independent | sin | 17 | NA |
| 403 | 22.85 | temperature | 25 | 14400 | > th | dose independent | rect. | 9 | 6 |
| 427 | 22.86 | temperature | 25 | 14400 | < th | dose dependent | no | NA | NA |
| 438 | 22.86 | temperature | 25 | 14400 | < th | dose dependent | rect. | 14 | 23 |
| 474 | 22.88 | temperature | 25 | 14400 | < th | dose dependent | rect. | 19 | 23 |
| 495 | 22.90 | humidity | 90 | 14400 | > th | dose independent | rect. | 9 | 5 |
| 556 | 22.93 | wind | 5 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 564 | 22.94 | humidity | 90 | 14400 | > th | dose independent | rect. | 9 | 2 |
| 566 | 22.94 | humidity | 90 | 14400 | < th | dose independent | rect. | 17 | 5 |
| 588 | 22.95 | humidity | 90 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 626 | 22.97 | wind | 5 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 639 | 22.98 | wind | 5 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 640 | 22.98 | wind | 1 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 686 | 23.00 | humidity | 90 | 14400 | < th | dose independent | rect. | 9 | 5 |
| 719 | 23.01 | humidity | 90 | 14400 | > th | dose dependent | rect. | 9 | 13 |
| 731 | 23.02 | humidity | 90 | 14400 | < th | dose independent | rect. | 9 | 13 |
| 746 | 23.03 | temperature | 20 | 14400 | < th | dose independent | sin | 17 | NA |
| 815 | 23.06 | humidity | 90 | 14400 | < th | dose independent | rect. | 9 | 10 |
| 817 | 23.06 | humidity | 90 | 14400 | > th | dose independent | rect. | 9 | 13 |
| 894 | 23.09 | humidity | 90 | 14400 | > th | dose dependent | rect. | 9 | 2 |
| 913 | 23.10 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 5 |
| 917 | 23.10 | humidity | 90 | 14400 | > th | dose independent | rect. | 9 | 10 |
| 945 | 23.11 | wind | 1 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 950 | 23.11 | wind | 5 | 14400 | < th | dose independent | rect. | 20 | 13 |
| 989 | 23.12 | wind | 5 | 14400 | > th | dose independent | rect. | 20 | 13 |