BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0185300 Os07g0185300|AK071133
         (175 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G27990.1  | chr4:13923991-13924647 REVERSE LENGTH=219           94   4e-20
AT3G07430.1  | chr3:2379251-2379949 FORWARD LENGTH=233             91   4e-19

>AT4G27990.1 | chr4:13923991-13924647 REVERSE LENGTH=219
          Length = 218

 Score = 93.6 bits (231), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 42/73 (57%), Positives = 53/73 (72%), Gaps = 1/73 (1%)

Query: 84  LRAPVAAAMSAVVRWLGVYREVLLVGVLFSWFPNIPWDRQPFSALRDLCDPFLALCREVM 143
           L  P+    + + +WL +Y  VL+V VL SWFPNIPWDRQP SA+RDLCDP+L L R ++
Sbjct: 129 LNTPLTVVAAGLSKWLDIYSGVLMVRVLLSWFPNIPWDRQPLSAIRDLCDPYLNLFRNII 188

Query: 144 PPVFGRKLDLSPL 156
           PPVF   LD+SPL
Sbjct: 189 PPVFD-TLDVSPL 200



>AT3G07430.1 | chr3:2379251-2379949 FORWARD LENGTH=233
          Length = 232

 Score = 90.5 bits (223), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 40/73 (54%), Positives = 52/73 (71%), Gaps = 1/73 (1%)

Query: 84  LRAPVAAAMSAVVRWLGVYREVLLVGVLFSWFPNIPWDRQPFSALRDLCDPFLALCREVM 143
           L  P+      + +WL +Y  VL+V VL SWFPNIPW+RQP SA+RDLCDP+L L R ++
Sbjct: 143 LNTPLTVVAVGIKKWLDIYSGVLMVRVLLSWFPNIPWERQPLSAIRDLCDPYLNLFRNII 202

Query: 144 PPVFGRKLDLSPL 156
           PP+F   LD+SPL
Sbjct: 203 PPIFD-TLDVSPL 214



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.328    0.142    0.471 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,289,127
Number of extensions: 73097
Number of successful extensions: 114
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 3
Length of query: 175
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 83
Effective length of database: 8,584,297
Effective search space: 712496651
Effective search space used: 712496651
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 108 (46.2 bits)