Os07g0172500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to DNA-directed RNA polymerase II 13.6 kDa polypeptide (EC 2.7.7.6).
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Os07g0172500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to DNA-directed RNA polymerase II 13.6 kDa polypeptide (EC 2.7.7.6).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 17.95 | 0.199 | 10 | 0.696 | 0.522 | 0.64 | 0.172 | -0.601 | -0.00828 | 14.6 | 20.01 | 4024 | -- | -- |
| 18.34 | 0.199 | 9.98 | 0.789 | 0.529 | 0.777 | 0.208 | -- | 0.0342 | 14.4 | 19.6 | 3960 | -- | -- |
| 18.05 | 0.198 | 10 | 0.698 | 0.522 | 0.636 | -- | -0.621 | -0.00797 | 14.6 | 20.04 | 4015 | -- | -- |
| 18.44 | 0.2 | 9.98 | 0.777 | 0.53 | 0.793 | -- | -- | 0.0211 | 14.6 | 19.6 | 3978 | -- | -- |
| 33.35 | 0.269 | 10 | 0.675 | -- | 0.626 | -- | -0.592 | -0.0228 | -- | 19.8 | 4553 | -- | -- |
| 28.27 | 0.249 | 9.94 | 1.24 | 0.492 | -- | 0.241 | -- | 0.213 | 14.7 | -- | -- | -- | -- |
| 28.47 | 0.25 | 9.94 | 1.24 | 0.492 | -- | -- | -- | 0.215 | 14.6 | -- | -- | -- | -- |
| 33.58 | 0.27 | 9.99 | 0.544 | -- | 0.874 | -- | -- | -0.0254 | -- | 18.5 | 11658 | -- | -- |
| 19.5 | 0.206 | 10 | -- | 0.496 | 1.1 | -- | -- | -0.171 | 14.6 | 18.5 | 41610 | -- | -- |
| 42.64 | 0.305 | 9.94 | 1.22 | -- | -- | -- | -- | 0.202 | -- | -- | -- | -- | -- |
| 69.1 | 0.389 | 9.97 | -- | 0.468 | -- | -- | -- | 0.0766 | 14.6 | -- | -- | -- | -- |
| 34.21 | 0.272 | 10 | -- | -- | 1.16 | -- | -- | -0.175 | -- | 17.48 | 47520 | -- | -- |
| 81.94 | 0.423 | 9.97 | -- | -- | -- | -- | -- | 0.067 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.04 | temperature | 20 | 4320 | < th | dose independent | rect. | 17 | 19 |
| 2 | 18.04 | temperature | 20 | 4320 | > th | dose independent | rect. | 17 | 20 |
| 27 | 18.10 | temperature | 25 | 4320 | < th | dose dependent | rect. | 9 | 1 |
| 28 | 18.10 | temperature | 25 | 4320 | < th | dose dependent | rect. | 7 | 5 |
| 41 | 18.13 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 23 |
| 44 | 18.13 | temperature | 25 | 4320 | < th | dose dependent | rect. | 8 | 3 |
| 50 | 18.14 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 22 |
| 60 | 18.15 | temperature | 20 | 4320 | > th | dose independent | rect. | 1 | 23 |
| 63 | 18.16 | temperature | 20 | 4320 | > th | dose independent | no | NA | NA |
| 70 | 18.16 | temperature | 20 | 4320 | > th | dose independent | rect. | 11 | 22 |
| 78 | 18.17 | temperature | 20 | 4320 | < th | dose independent | no | NA | NA |
| 79 | 18.17 | temperature | 20 | 4320 | < th | dose independent | rect. | 2 | 10 |
| 95 | 18.17 | temperature | 20 | 4320 | > th | dose independent | rect. | 8 | 23 |
| 100 | 18.17 | temperature | 20 | 4320 | < th | dose independent | rect. | 1 | 23 |
| 102 | 18.17 | temperature | 20 | 4320 | < th | dose independent | rect. | 11 | 23 |
| 104 | 18.18 | temperature | 20 | 4320 | > th | dose independent | rect. | 2 | 11 |
| 115 | 18.18 | temperature | 20 | 4320 | > th | dose independent | rect. | 4 | 23 |
| 126 | 18.19 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 15 |
| 143 | 18.19 | temperature | 20 | 4320 | < th | dose independent | rect. | 5 | 23 |
| 144 | 18.19 | temperature | 20 | 4320 | < th | dose independent | rect. | 8 | 23 |
| 148 | 18.20 | temperature | 20 | 4320 | > th | dose independent | sin | 4 | NA |
| 149 | 18.20 | temperature | 20 | 4320 | < th | dose independent | sin | 4 | NA |
| 181 | 18.21 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 15 |
| 208 | 18.22 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 16 |
| 225 | 18.23 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 12 |
| 281 | 18.25 | temperature | 20 | 4320 | > th | dose independent | sin | 14 | NA |
| 284 | 18.25 | temperature | 20 | 4320 | > th | dose independent | rect. | 17 | 10 |
| 327 | 18.27 | temperature | 20 | 4320 | < th | dose independent | rect. | 5 | 6 |
| 364 | 18.29 | temperature | 20 | 4320 | < th | dose independent | sin | 14 | NA |
| 365 | 18.29 | temperature | 20 | 4320 | < th | dose independent | rect. | 16 | 12 |
| 385 | 18.30 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 559 | 18.41 | atmosphere | 1010 | 43200 | > th | dose dependent | sin | 7 | NA |
| 649 | 18.44 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 23 | 2 |
| 681 | 18.45 | humidity | 60 | 43200 | < th | dose independent | rect. | 20 | 13 |
| 685 | 18.45 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 718 | 18.46 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 820 | 18.48 | atmosphere | 1010 | 43200 | > th | dose dependent | no | NA | NA |
| 842 | 18.48 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 2 | 22 |
| 854 | 18.48 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 7 | 23 |
| 864 | 18.49 | humidity | 60 | 43200 | > th | dose independent | rect. | 20 | 13 |
| 902 | 18.50 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 903 | 18.50 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 20 | 1 |