BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0172500 Os07g0172500|AK068132
         (120 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G52090.2  | chr3:19318069-19318998 REVERSE LENGTH=147          176   2e-45

>AT3G52090.2 | chr3:19318069-19318998 REVERSE LENGTH=147
          Length = 146

 Score =  176 bits (446), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 87/142 (61%), Positives = 101/142 (71%), Gaps = 30/142 (21%)

Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIVNAGSFTIEREDHTIGNILRMQLHRDPNVLFAG 60
           MNAP+RYERFVVPEGTKKVSY+RDTKI+NA SFT+EREDHTIGNI+RMQLHRD NVLFAG
Sbjct: 1   MNAPERYERFVVPEGTKKVSYDRDTKIINAASFTVEREDHTIGNIVRMQLHRDENVLFAG 60

Query: 61  YKLPHPLQYKILVR------------------------------VHTANQSTPTQAYTQA 90
           Y+LPHPL+YKI+VR                              +HT +QS+P QAY QA
Sbjct: 61  YQLPHPLKYKIIVRDPKDWFRNLKVVYGCLETVNISWFKLLVLTIHTTSQSSPMQAYNQA 120

Query: 91  INDLDKELENLKQAFEDEKIRY 112
           INDLDKEL+ LK  FE E  ++
Sbjct: 121 INDLDKELDYLKNQFEAEVAKF 142



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.134    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,680,427
Number of extensions: 102026
Number of successful extensions: 384
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 383
Number of HSP's successfully gapped: 1
Length of query: 120
Length of database: 11,106,569
Length adjustment: 86
Effective length of query: 34
Effective length of database: 8,748,793
Effective search space: 297458962
Effective search space used: 297458962
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 105 (45.1 bits)