Os07g0167100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Yarrowia lipolytica chromosome A of strain CLIB99 of Yarrowia lipolytica.
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Os07g0167100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Yarrowia lipolytica chromosome A of strain CLIB99 of Yarrowia lipolytica.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.24 | 0.245 | 12.4 | -0.243 | 1.16 | -0.734 | 0.698 | 0.0799 | 0.0104 | 5.84 | 20.9 | 2555 | -- | -- |
| 27.13 | 0.243 | 12.4 | -0.283 | 1.16 | -0.721 | 0.716 | -- | 0.0127 | 5.83 | 21.3 | 2561 | -- | -- |
| 28.33 | 0.248 | 12.4 | -0.23 | 1.16 | -0.709 | -- | 0.185 | 0.0215 | 5.85 | 21.21 | 2555 | -- | -- |
| 28.4 | 0.248 | 12.4 | -0.273 | 1.16 | -0.728 | -- | -- | 0.0111 | 5.85 | 21.3 | 2559 | -- | -- |
| 52.04 | 0.336 | 12.4 | -0.623 | -- | -0.847 | -- | -0.752 | -0.0309 | -- | 26.51 | 362 | -- | -- |
| 40.54 | 0.299 | 12.4 | -0.653 | 1.14 | -- | 0.784 | -- | -0.202 | 6 | -- | -- | -- | -- |
| 42.05 | 0.304 | 12.4 | -0.646 | 1.14 | -- | -- | -- | -0.205 | 6.02 | -- | -- | -- | -- |
| 48.66 | 0.325 | 12.4 | -0.385 | -- | -1.07 | -- | -- | -0.00728 | -- | 27.56 | 413 | -- | -- |
| 29.66 | 0.254 | 12.4 | -- | 1.17 | -0.856 | -- | -- | 0.0275 | 5.82 | 20.4 | 2636 | -- | -- |
| 109.61 | 0.489 | 12.4 | -0.613 | -- | -- | -- | -- | -0.179 | -- | -- | -- | -- | -- |
| 53.05 | 0.341 | 12.4 | -- | 1.13 | -- | -- | -- | -0.133 | 6.05 | -- | -- | -- | -- |
| 52.46 | 0.337 | 12.4 | -- | -- | -1.11 | -- | -- | 0.0405 | -- | 27.51 | 417 | -- | -- |
| 119.52 | 0.51 | 12.4 | -- | -- | -- | -- | -- | -0.111 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 25.29 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 5 |
| 2 | 25.29 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 14 |
| 3 | 25.30 | temperature | 15 | 720 | > th | dose dependent | sin | 5 | NA |
| 11 | 25.44 | temperature | 30 | 720 | < th | dose dependent | sin | 5 | NA |
| 15 | 25.50 | temperature | 15 | 720 | > th | dose dependent | rect. | 22 | 18 |
| 34 | 25.67 | temperature | 20 | 720 | > th | dose dependent | rect. | 2 | 8 |
| 76 | 25.94 | temperature | 20 | 720 | > th | dose dependent | rect. | 22 | 12 |
| 88 | 26.00 | temperature | 20 | 30 | > th | dose dependent | rect. | 1 | 19 |
| 92 | 26.02 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 14 |
| 160 | 26.33 | temperature | 15 | 270 | > th | dose dependent | sin | 1 | NA |
| 381 | 27.00 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 405 | 27.03 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 450 | 27.08 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 537 | 27.15 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 573 | 27.18 | temperature | 30 | 1440 | < th | dose dependent | sin | 10 | NA |
| 633 | 27.22 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 8 |
| 656 | 27.23 | temperature | 30 | 270 | < th | dose dependent | sin | 0 | NA |
| 730 | 27.28 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 8 |
| 745 | 27.29 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 10 |
| 791 | 27.32 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 10 |
| 820 | 27.34 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 821 | 27.34 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 5 |
| 871 | 27.37 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 933 | 27.41 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 6 |
| 947 | 27.42 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |