Os07g0164500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase (EC 2.4.1.-) (Dolichyl-P-Glc:Man9GlcNAc2-PP-dolichyl glucosyltransferase).
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Os07g0164500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase (EC 2.4.1.-) (Dolichyl-P-Glc:Man9GlcNAc2-PP-dolichyl glucosyltransferase).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 59.31 | 0.362 | 7.67 | 0.844 | 0.211 | -0.466 | -0.582 | 0.149 | 0.429 | 5.09 | 26.96 | 62 | -- | -- |
| 58.94 | 0.358 | 7.67 | 0.809 | 0.233 | -0.449 | -0.621 | -- | 0.421 | 5.23 | 26.93 | 39 | -- | -- |
| 59.61 | 0.36 | 7.66 | 0.873 | 0.232 | -0.462 | -- | 0.326 | 0.442 | 5.69 | 26.96 | 39 | -- | -- |
| 59.87 | 0.36 | 7.67 | 0.824 | 0.226 | -0.447 | -- | -- | 0.436 | 5.66 | 26.8 | 36 | -- | -- |
| 61.64 | 0.366 | 7.66 | 0.9 | -- | -0.538 | -- | 0.315 | 0.477 | -- | 26.86 | 43 | -- | -- |
| 70.82 | 0.395 | 7.69 | 0.682 | 0.531 | -- | -0.401 | -- | 0.334 | 4.03 | -- | -- | -- | -- |
| 71.28 | 0.395 | 7.69 | 0.687 | 0.528 | -- | -- | -- | 0.336 | 4.01 | -- | -- | -- | -- |
| 61.89 | 0.366 | 7.67 | 0.834 | -- | -0.519 | -- | -- | 0.455 | -- | 26.8 | 36 | -- | -- |
| 76.55 | 0.407 | 7.69 | -- | 0.305 | -0.343 | -- | -- | 0.335 | 4.88 | 26.9 | 36 | -- | -- |
| 86.52 | 0.435 | 7.69 | 0.708 | -- | -- | -- | -- | 0.35 | -- | -- | -- | -- | -- |
| 83.71 | 0.428 | 7.71 | -- | 0.542 | -- | -- | -- | 0.26 | 3.99 | -- | -- | -- | -- |
| 79.94 | 0.416 | 7.69 | -- | -- | -0.466 | -- | -- | 0.355 | -- | 26.9 | 36 | -- | -- |
| 99.76 | 0.466 | 7.71 | -- | -- | -- | -- | -- | 0.272 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 59.48 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 7 | 22 |
| 8 | 60.41 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 7 | 13 |
| 9 | 60.47 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 5 | 13 |
| 11 | 60.52 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 7 | 2 |
| 15 | 60.58 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 28 | 60.82 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 7 | 17 |
| 31 | 60.85 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 16 |
| 32 | 60.88 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 7 | 19 |
| 44 | 61.02 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 7 | 15 |
| 62 | 61.22 | temperature | 25.0 | 720 | > th | dose independent | rect. | 7 | 2 |
| 68 | 61.27 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 18 | 23 |
| 71 | 61.29 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 107 | 61.51 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 5 | 18 |
| 108 | 61.51 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 1 | 23 |
| 117 | 61.56 | temperature | 30.0 | 90 | < th | dose dependent | sin | 0 | NA |
| 127 | 61.61 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 3 | 21 |
| 129 | 61.62 | temperature | 25.0 | 90 | > th | dose dependent | no | NA | NA |
| 132 | 61.63 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 23 | 21 |
| 134 | 61.63 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 159 | 61.69 | temperature | 25.0 | 270 | > th | dose dependent | sin | 9 | NA |
| 166 | 61.70 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 1 | 19 |
| 238 | 61.86 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 2 | 16 |
| 242 | 61.87 | temperature | 25.0 | 90 | > th | dose dependent | sin | 2 | NA |
| 346 | 62.07 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 375 | 62.16 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 1 | 10 |
| 402 | 62.21 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 20 |
| 409 | 62.23 | temperature | 20.0 | 720 | > th | dose dependent | sin | 5 | NA |
| 451 | 62.32 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 506 | 62.52 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 508 | 62.52 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 518 | 62.55 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 19 | 1 |
| 535 | 62.59 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 545 | 62.61 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 17 | 3 |
| 553 | 62.63 | temperature | 10.0 | 90 | > th | dose dependent | sin | 1 | NA |
| 565 | 62.65 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 569 | 62.67 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 19 | 1 |
| 570 | 62.67 | temperature | 25.0 | 270 | > th | dose independent | rect. | 1 | 19 |
| 571 | 62.67 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 3 | 8 |
| 577 | 62.68 | temperature | 25.0 | 90 | > th | dose independent | rect. | 7 | 13 |
| 634 | 62.77 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 18 | 17 |
| 655 | 62.82 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 17 | 3 |
| 679 | 62.84 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 23 | 18 |
| 724 | 62.91 | temperature | 25.0 | 270 | < th | dose independent | rect. | 2 | 19 |
| 747 | 62.94 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 763 | 62.97 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 13 | 5 |
| 764 | 62.97 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 9 | 9 |
| 769 | 62.97 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 13 | 5 |
| 771 | 62.97 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 9 | 9 |
| 774 | 62.97 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 7 | 17 |
| 775 | 62.98 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 12 | 6 |
| 781 | 62.98 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 7 | 12 |
| 783 | 62.98 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 7 | 15 |
| 785 | 62.98 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 7 | 19 |
| 796 | 62.99 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 7 | 21 |
| 827 | 63.03 | humidity | 90.0 | 1440 | > th | dose dependent | rect. | 20 | 2 |
| 839 | 63.05 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 9 | 9 |
| 863 | 63.07 | radiation | 1.0 | 1440 | < th | dose dependent | sin | 21 | NA |
| 865 | 63.07 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 13 |
| 876 | 63.08 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 11 |
| 889 | 63.09 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 8 |
| 918 | 63.11 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 6 | 12 |
| 950 | 63.13 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 1 | 9 |
| 967 | 63.14 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 4 | 14 |