BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0164500 Os07g0164500|J065210M20
         (132 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G38460.1  | chr5:15398592-15400987 REVERSE LENGTH=534          138   7e-34
AT2G44660.1  | chr2:18420832-18422827 REVERSE LENGTH=507           46   5e-06

>AT5G38460.1 | chr5:15398592-15400987 REVERSE LENGTH=534
          Length = 533

 Score =  138 bits (348), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 63/101 (62%), Positives = 78/101 (77%)

Query: 29  STALLISFAALLLRVLVSVGPYSGQGVAPKFGDYEAQRHWMELTLHLPSSDWYRNTSAND 88
           ++ L IS  ALL+R  V++ PYSG G+ PKFGD+EAQRHWME+T +LP  DWYRN + ND
Sbjct: 40  TSFLCISLFALLIRSAVTMYPYSGAGIPPKFGDFEAQRHWMEITTNLPVIDWYRNGTYND 99

Query: 89  LAYWGLDYPPLSAYQSRLHGLLLNASLPDAVALRSSRGFES 129
           L YWGLDYPPL+AYQS +HG+ L    P++VAL SSRG ES
Sbjct: 100 LTYWGLDYPPLTAYQSYIHGIFLRFFNPESVALLSSRGHES 140



>AT2G44660.1 | chr2:18420832-18422827 REVERSE LENGTH=507
          Length = 506

 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 4/69 (5%)

Query: 61  DYEAQRHWMELTLHLPSSDWYRNTSANDLAYWGLDYPPLSAYQSRLHGLLLNASLPDAVA 120
           D+E  R+W+ +T  LP + WY + ++     W LDYPP  AY  R   +      P  V 
Sbjct: 34  DFEVHRNWLAITNSLPLTKWYFDETSQ----WTLDYPPFFAYFERFLSIFARLVDPRIVD 89

Query: 121 LRSSRGFES 129
           L+S   + +
Sbjct: 90  LQSGLDYNA 98



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.131    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,502,744
Number of extensions: 90826
Number of successful extensions: 181
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 181
Number of HSP's successfully gapped: 2
Length of query: 132
Length of database: 11,106,569
Length adjustment: 87
Effective length of query: 45
Effective length of database: 8,721,377
Effective search space: 392461965
Effective search space used: 392461965
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 106 (45.4 bits)