Os07g0160600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Beta-Ig-H3/fasciclin domain containing protein.
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Os07g0160600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Beta-Ig-H3/fasciclin domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 828.59 | 1.35 | 8.81 | -7.19 | 0.256 | 4.42 | -2.4 | -7.31 | -1.09 | 14 | 26.81 | 1128 | 9.54 | -- |
| 842.41 | 1.35 | 8.74 | -5.76 | 0.268 | 3.64 | -2.02 | -- | -0.871 | 13.3 | 26.81 | 1114 | 9.39 | -- |
| 849.08 | 1.36 | 8.77 | -6.9 | 0.254 | 4.3 | -- | -5.55 | -0.992 | 12.8 | 26.98 | 1126 | 9.28 | -- |
| 853.23 | 1.36 | 8.64 | -5.79 | 0.298 | 3.77 | -- | -- | -0.818 | 12.7 | 26.84 | 1091 | 9 | -- |
| 852.22 | 1.36 | 8.76 | -6.86 | -- | 4.19 | -- | -5.44 | -0.965 | -- | 27.13 | 1144 | 9.26 | -- |
| 1341.77 | 1.72 | 8.67 | -4.76 | 0.6 | -- | 3.39 | -- | -0.994 | 2.53 | -- | -- | -- | -- |
| 1382.82 | 1.74 | 8.68 | -4.84 | 0.611 | -- | -- | -- | -1.01 | 2.63 | -- | -- | -- | -- |
| 856.8 | 1.36 | 8.63 | -5.79 | -- | 3.63 | -- | -- | -0.788 | -- | 27.17 | 1126 | 8.94 | -- |
| 1688.88 | 1.91 | 8.45 | -- | 0.0997 | 2.76 | -- | -- | -0.0127 | 11.2 | 28.5 | 1058 | 6.94 | -- |
| 1404.62 | 1.75 | 8.67 | -4.82 | -- | -- | -- | -- | -0.998 | -- | -- | -- | -- | -- |
| 2001.17 | 2.09 | 8.56 | -- | 0.517 | -- | -- | -- | -0.474 | 2.51 | -- | -- | -- | -- |
| 1689.39 | 1.91 | 8.45 | -- | -- | 2.74 | -- | -- | -0.0155 | -- | 28.56 | 1058 | 6.97 | -- |
| 2016.87 | 2.1 | 8.55 | -- | -- | -- | -- | -- | -0.464 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 885.01 | temperature | 30 | 1440 | > th | dose dependent | sin | 17 | NA |
| 4 | 885.31 | temperature | 30 | 1440 | > th | dose dependent | rect. | 13 | 6 |
| 20 | 885.74 | temperature | 30 | 1440 | > th | dose dependent | rect. | 11 | 8 |
| 54 | 886.52 | temperature | 30 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 71 | 886.96 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 21 |
| 93 | 887.71 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 19 |
| 99 | 887.81 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 22 |
| 100 | 887.87 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 16 |
| 105 | 887.96 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 13 |
| 108 | 887.98 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 10 |
| 125 | 888.04 | temperature | 30 | 1440 | > th | dose dependent | no | NA | NA |
| 218 | 888.27 | temperature | 30 | 1440 | > th | dose independent | sin | 13 | NA |
| 221 | 888.65 | temperature | 30 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 226 | 888.79 | temperature | 30 | 1440 | < th | dose independent | sin | 13 | NA |
| 251 | 889.46 | temperature | 30 | 1440 | > th | dose dependent | rect. | 14 | 2 |
| 257 | 889.79 | temperature | 30 | 1440 | > th | dose independent | rect. | 15 | 21 |
| 259 | 889.94 | temperature | 30 | 1440 | > th | dose independent | rect. | 15 | 4 |
| 281 | 890.15 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 15 |
| 298 | 890.55 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 23 |
| 302 | 891.36 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 22 |
| 313 | 891.49 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 23 |
| 316 | 891.51 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 23 |
| 319 | 891.53 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |
| 320 | 891.53 | temperature | 30 | 1440 | < th | dose independent | rect. | 23 | 22 |
| 323 | 891.54 | temperature | 30 | 1440 | < th | dose independent | rect. | 23 | 20 |
| 337 | 891.59 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 19 |
| 340 | 891.60 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 17 |
| 343 | 891.61 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 16 |
| 357 | 891.63 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 13 |
| 359 | 891.64 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 415 | 891.91 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 13 |
| 420 | 892.16 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 16 |
| 436 | 892.24 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 10 |
| 443 | 892.42 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 6 |
| 444 | 892.43 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 4 |
| 458 | 892.63 | humidity | 80 | 1440 | < th | dose dependent | rect. | 16 | 5 |
| 542 | 895.05 | temperature | 30 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 564 | 895.91 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |
| 734 | 899.35 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 15 |
| 795 | 900.70 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 960 | 905.52 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 12 |
| 974 | 905.92 | humidity | 80 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 988 | 906.50 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 1 |