Os07g0158400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : GCK domain containing protein.
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Os07g0158400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : GCK domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 99.4 | 0.468 | 8.24 | -0.813 | 0.56 | 1.08 | 0.876 | 2.02 | -0.487 | 17.6 | 10.32 | 62 | -- | -- |
| 105.41 | 0.478 | 8.23 | -0.731 | 0.6 | 0.903 | 1.21 | -- | -0.467 | 16.6 | 9.488 | 58 | -- | -- |
| 100.99 | 0.468 | 8.24 | -0.819 | 0.569 | 1.07 | -- | 2.05 | -0.487 | 17.6 | 8.383 | 56 | -- | -- |
| 108.86 | 0.486 | 8.23 | -0.757 | 0.583 | 0.95 | -- | -- | -0.471 | 17.6 | 3.9 | 45 | -- | -- |
| 110.74 | 0.49 | 8.23 | -0.803 | -- | 1.09 | -- | 1.8 | -0.523 | -- | -2.648 | 227 | -- | -- |
| 116.29 | 0.506 | 8.22 | -0.782 | 0.827 | -- | 1.28 | -- | -0.458 | 15.2 | -- | -- | -- | -- |
| 121.6 | 0.516 | 8.22 | -0.756 | 0.834 | -- | -- | -- | -0.451 | 15.3 | -- | -- | -- | -- |
| 117.94 | 0.506 | 8.23 | -0.803 | -- | 1.08 | -- | -- | -0.532 | -- | -3.101 | 259 | -- | -- |
| 123.82 | 0.518 | 8.22 | -- | 0.589 | 0.998 | -- | -- | -0.393 | 17.8 | 3.269 | 46 | -- | -- |
| 160.91 | 0.593 | 8.22 | -0.791 | -- | -- | -- | -- | -0.473 | -- | -- | -- | -- | -- |
| 136.67 | 0.547 | 8.2 | -- | 0.849 | -- | -- | -- | -0.366 | 15.3 | -- | -- | -- | -- |
| 134.89 | 0.541 | 8.21 | -- | -- | 1.07 | -- | -- | -0.441 | -- | -2.82 | 245 | -- | -- |
| 177.43 | 0.622 | 8.2 | -- | -- | -- | -- | -- | -0.385 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 98.91 | radiation | 10 | 90 | > th | dose dependent | rect. | 11 | 23 |
| 2 | 99.36 | radiation | 1 | 90 | > th | dose dependent | rect. | 6 | 10 |
| 4 | 99.50 | radiation | 1 | 90 | > th | dose dependent | rect. | 4 | 12 |
| 33 | 99.76 | radiation | 40 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 61 | 99.95 | radiation | 10 | 90 | > th | dose dependent | no | NA | NA |
| 248 | 100.22 | radiation | 1 | 90 | > th | dose dependent | sin | 2 | NA |
| 249 | 100.23 | radiation | 40 | 30 | < th | dose dependent | no | NA | NA |
| 250 | 100.24 | radiation | 40 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 251 | 100.27 | radiation | 40 | 90 | < th | dose dependent | sin | 2 | NA |
| 252 | 100.28 | radiation | 20 | 30 | < th | dose independent | rect. | 21 | 23 |
| 273 | 100.46 | radiation | 1 | 270 | > th | dose dependent | sin | 7 | NA |
| 274 | 100.46 | radiation | 10 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 275 | 100.49 | radiation | 40 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 282 | 100.67 | radiation | 40 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 283 | 100.71 | radiation | 40 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 285 | 100.73 | temperature | 25 | 90 | > th | dose dependent | rect. | 19 | 21 |
| 303 | 100.81 | radiation | 40 | 270 | < th | dose dependent | sin | 6 | NA |
| 308 | 100.92 | radiation | 20 | 30 | < th | dose independent | rect. | 13 | 23 |
| 316 | 101.00 | radiation | 20 | 30 | < th | dose independent | rect. | 11 | 23 |
| 410 | 101.06 | radiation | 20 | 30 | < th | dose independent | no | NA | NA |
| 411 | 101.06 | radiation | 20 | 30 | < th | dose independent | rect. | 15 | 23 |
| 425 | 101.10 | radiation | 20 | 30 | > th | dose independent | no | NA | NA |
| 426 | 101.10 | radiation | 20 | 30 | > th | dose independent | rect. | 7 | 10 |
| 536 | 101.17 | radiation | 30 | 90 | < th | dose independent | rect. | 3 | 16 |
| 691 | 101.24 | radiation | 20 | 30 | < th | dose independent | rect. | 9 | 23 |
| 722 | 101.28 | radiation | 20 | 30 | > th | dose independent | rect. | 15 | 23 |
| 868 | 101.49 | radiation | 20 | 30 | > th | dose independent | rect. | 11 | 23 |
| 874 | 101.56 | temperature | 30 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 889 | 101.58 | radiation | 40 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 999 | 101.74 | radiation | 20 | 30 | < th | dose independent | rect. | 23 | 23 |