Os07g0153300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF1365 family protein.
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Os07g0153300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF1365 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 62.67 | 0.372 | 8.81 | 0.63 | 1.01 | 2.26 | -0.444 | -0.966 | 0.0859 | 16 | 0.35 | 711 | -- | -- |
| 62.94 | 0.37 | 8.81 | 0.616 | 1 | 2.3 | 0.122 | -- | 0.0829 | 16.2 | 0.1781 | 724 | -- | -- |
| 62.75 | 0.369 | 8.81 | 0.62 | 1.04 | 2.29 | -- | -0.475 | 0.0738 | 16 | 0.2702 | 711 | -- | -- |
| 63 | 0.37 | 8.81 | 0.613 | 1.05 | 2.37 | -- | -- | 0.0743 | 16.3 | 0.17 | 723 | -- | -- |
| 71.92 | 0.395 | 8.75 | 0.706 | -- | 2.2 | -- | -0.33 | 0.173 | -- | 0.25 | 2290 | -- | -- |
| 74.15 | 0.404 | 8.8 | 0.399 | 0.997 | -- | -0.11 | -- | -0.022 | 7.22 | -- | -- | -- | -- |
| 74.18 | 0.403 | 8.8 | 0.397 | 0.997 | -- | -- | -- | -0.0218 | 7.22 | -- | -- | -- | -- |
| 69.67 | 0.389 | 8.75 | 0.692 | -- | 1.85 | -- | -- | 0.175 | -- | 0.22 | 2331 | -- | -- |
| 72.25 | 0.396 | 8.83 | -- | 0.945 | 2.27 | -- | -- | 0.0196 | 16.2 | 0.92 | 721 | -- | -- |
| 126.8 | 0.526 | 8.82 | 0.414 | -- | -- | -- | -- | -0.00459 | -- | -- | -- | -- | -- |
| 78.33 | 0.414 | 8.81 | -- | 1 | -- | -- | -- | -0.0659 | 7.2 | -- | -- | -- | -- |
| 81.27 | 0.42 | 8.75 | -- | -- | 1.57 | -- | -- | 0.12 | -- | 0.98 | 2322 | -- | -- |
| 131.33 | 0.535 | 8.83 | -- | -- | -- | -- | -- | -0.0506 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 55.64 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 19 |
| 7 | 56.53 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 14 |
| 9 | 56.64 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 16 |
| 86 | 60.55 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 5 |
| 96 | 60.91 | radiation | 1 | 720 | < th | dose dependent | rect. | 16 | 13 |
| 109 | 61.24 | radiation | 1 | 720 | < th | dose dependent | sin | 13 | NA |
| 146 | 61.83 | radiation | 1 | 720 | < th | dose dependent | rect. | 2 | 18 |
| 149 | 61.87 | radiation | 1 | 720 | < th | dose dependent | rect. | 16 | 22 |
| 164 | 61.97 | radiation | 1 | 720 | < th | dose dependent | rect. | 7 | 22 |
| 171 | 62.03 | radiation | 1 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 193 | 62.16 | radiation | 1 | 720 | < th | dose independent | rect. | 15 | 15 |
| 218 | 62.38 | radiation | 1 | 720 | > th | dose independent | sin | 13 | NA |
| 219 | 62.38 | radiation | 1 | 720 | < th | dose independent | rect. | 8 | 22 |
| 221 | 62.42 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 11 |
| 236 | 62.49 | radiation | 1 | 720 | < th | dose independent | sin | 13 | NA |
| 237 | 62.49 | radiation | 1 | 720 | < th | dose independent | rect. | 2 | 18 |
| 270 | 62.64 | radiation | 1 | 720 | < th | dose dependent | rect. | 21 | 23 |
| 280 | 62.70 | temperature | 15 | 720 | > th | dose dependent | rect. | 13 | 8 |
| 289 | 62.75 | radiation | 1 | 720 | < th | dose dependent | no | NA | NA |
| 309 | 62.83 | temperature | 30 | 720 | < th | dose dependent | rect. | 10 | 11 |
| 327 | 62.91 | radiation | 1 | 720 | > th | dose independent | rect. | 14 | 16 |
| 344 | 62.95 | temperature | 15 | 90 | > th | dose dependent | rect. | 15 | 12 |
| 369 | 63.08 | radiation | 1 | 720 | < th | dose independent | rect. | 1 | 23 |
| 372 | 63.09 | temperature | 25 | 10 | < th | dose dependent | rect. | 8 | 23 |
| 374 | 63.10 | radiation | 1 | 720 | > th | dose independent | rect. | 14 | 18 |
| 378 | 63.11 | temperature | 25 | 720 | > th | dose independent | rect. | 14 | 4 |
| 384 | 63.13 | radiation | 1 | 720 | < th | dose dependent | rect. | 16 | 4 |
| 387 | 63.13 | temperature | 25 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 399 | 63.17 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 17 | 1 |
| 401 | 63.19 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 4 |
| 405 | 63.21 | radiation | 1 | 720 | > th | dose independent | rect. | 13 | 23 |
| 406 | 63.22 | radiation | 1 | 720 | < th | dose independent | rect. | 16 | 22 |
| 408 | 63.22 | radiation | 1 | 720 | < th | dose dependent | rect. | 23 | 23 |
| 413 | 63.24 | radiation | 1 | 720 | < th | dose dependent | rect. | 7 | 13 |
| 478 | 63.48 | temperature | 25 | 90 | < th | dose independent | rect. | 12 | 18 |
| 488 | 63.49 | temperature | 25 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 506 | 63.54 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 13 |
| 510 | 63.55 | temperature | 25 | 10 | < th | dose dependent | no | NA | NA |
| 515 | 63.55 | temperature | 25 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 520 | 63.57 | radiation | 1 | 720 | < th | dose independent | rect. | 21 | 23 |
| 539 | 63.61 | temperature | 15 | 90 | > th | dose dependent | sin | 13 | NA |
| 544 | 63.61 | temperature | 25 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 545 | 63.61 | temperature | 25 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 553 | 63.64 | radiation | 1 | 720 | < th | dose independent | rect. | 13 | 23 |
| 565 | 63.67 | temperature | 25 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 572 | 63.69 | radiation | 1 | 720 | < th | dose independent | no | NA | NA |
| 577 | 63.70 | temperature | 20 | 10 | > th | dose dependent | sin | 12 | NA |
| 610 | 63.78 | temperature | 15 | 10 | > th | dose dependent | rect. | 14 | 22 |
| 611 | 63.79 | radiation | 1 | 720 | > th | dose independent | rect. | 5 | 14 |
| 623 | 63.79 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 23 |
| 633 | 63.82 | radiation | 1 | 720 | < th | dose independent | rect. | 8 | 12 |
| 641 | 63.83 | radiation | 1 | 720 | > th | dose independent | rect. | 13 | 6 |
| 654 | 63.84 | wind | 7 | 30 | > th | dose independent | rect. | 17 | 1 |
| 658 | 63.84 | temperature | 25 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 659 | 63.85 | radiation | 1 | 720 | > th | dose independent | no | NA | NA |
| 707 | 63.85 | temperature | 25 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 712 | 63.86 | temperature | 10 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 767 | 63.94 | radiation | 1 | 720 | < th | dose dependent | sin | 23 | NA |
| 816 | 64.03 | radiation | 1 | 720 | < th | dose independent | rect. | 23 | 23 |
| 875 | 64.13 | radiation | 1 | 720 | < th | dose independent | rect. | 16 | 4 |
| 943 | 64.24 | temperature | 15 | 720 | > th | dose dependent | sin | 19 | NA |
| 948 | 64.25 | radiation | 1 | 720 | > th | dose independent | rect. | 11 | 23 |
| 952 | 64.26 | temperature | 25 | 90 | < th | dose dependent | rect. | 16 | 1 |