BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0153300 Os07g0153300|AK066146
         (209 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G30130.1  | chr1:10587666-10589222 FORWARD LENGTH=312          203   6e-53

>AT1G30130.1 | chr1:10587666-10589222 FORWARD LENGTH=312
          Length = 311

 Score =  203 bits (516), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 102/165 (61%), Positives = 118/165 (71%), Gaps = 4/165 (2%)

Query: 37  DDARRVASTSGPVHLLTIPKSVGYEQNPLSIYYCYDSAEQGEDEKLKMCIAEVTNTPWGE 96
           D+ARRV+ T+GP+ LLTIP SVGYEQNPLS+YYCYD   +G  ++L  CIA+VTNTPWGE
Sbjct: 88  DEARRVSRTTGPIFLLTIPPSVGYEQNPLSLYYCYD--LEGSSKRLSKCIAQVTNTPWGE 145

Query: 97  RVMFTFQPGSDLVAKPLHVSPFMDMLGNWSIRAESPGDSLYVVILVQHPTLGNYFTAALH 156
           RV F F P SDLVAK L VSPFMDMLGNW IRA  PGD L V I  QHP  GNYF+A L 
Sbjct: 146 RVTFVFDPESDLVAKSLQVSPFMDMLGNWKIRANEPGDDLSVSIASQHPHFGNYFSATLK 205

Query: 157 AKLVEKTSSSLRLATFFWLMPHKVAAGIYWE-VSVLYLFLPFQYH 200
           AK +  +  S   A FFWLMPHKVA  IYW  + + +  +PF  H
Sbjct: 206 AKRIPLSRVS-DPAVFFWLMPHKVAIWIYWHALQLWWKSVPFIQH 249



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.135    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,803,003
Number of extensions: 147466
Number of successful extensions: 242
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 240
Number of HSP's successfully gapped: 1
Length of query: 209
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 115
Effective length of database: 8,529,465
Effective search space: 980888475
Effective search space used: 980888475
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 109 (46.6 bits)