FiT-DB / Search/ Help/ Sample detail

Os07g0150500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, C3HC-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.2 (0.00991) R2 : 0.676
β1 : 0.987 (0.0363) R2dD : 0.545 R2D : 0.315
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.413 (0.0212) R2dN8 : 0.362 R2N8 : 0.131
σ : 0.186
deviance : 15.84
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
11.89 0.162 12.2 1.03 0.198 0.336 0.305 -0.306 0.438 22.9 80.08 1351 -- --
11.98 0.161 12.2 1.03 0.198 0.32 0.323 -- 0.436 22.9 80 1349 -- --
12.27 0.163 12.2 1.02 0.202 0.326 -- -0.344 0.437 22.8 80.15 1326 -- --
12.37 0.164 12.2 0.994 0.198 0.317 -- -- 0.43 22.8 79.96 1356 -- --
14.11 0.175 12.2 1.05 -- 0.417 -- -0.868 0.477 -- 80.26 2983 -- --
13.28 0.171 12.3 0.995 0.192 -- 0.288 -- 0.413 22.5 -- -- -- --
13.62 0.173 12.3 0.984 0.191 -- -- -- 0.412 22.4 -- -- -- --
14.5 0.177 12.2 0.992 -- 0.336 -- -- 0.431 -- 80.33 1489 -- --
37.08 0.284 12.3 -- 0.212 0.306 -- -- 0.423 22.2 81.03 7646 -- --
15.84 0.186 12.2 0.987 -- -- -- -- 0.413 -- -- -- -- --
39.15 0.293 12.3 -- 0.197 -- -- -- 0.302 22.7 -- -- -- --
22.05 0.219 12.3 -- -- 0.877 -- -- 0.262 -- 64.12 47520 -- --
41.55 0.301 12.3 -- -- -- -- -- 0.303 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 11.07 radiation 1.0 30 > th dose independent rect. 12 21
5 11.39 radiation 1.0 30 > th dose independent sin 12 NA
8 11.43 radiation 1.0 30 > th dose independent rect. 14 18
10 11.44 radiation 10.0 30 < th dose dependent sin 13 NA
12 11.45 radiation 1.0 30 > th dose independent rect. 12 23
13 11.46 radiation 1.0 30 < th dose independent sin 13 NA
17 11.57 precipitation 0.1 30 < th dose independent rect. 12 21
19 11.57 precipitation 0.1 30 < th dose dependent rect. 12 21
20 11.58 humidity 80.0 10 < th dose independent rect. 12 20
21 11.59 humidity 80.0 720 < th dose independent rect. 19 2
31 11.61 radiation 1.0 30 > th dose independent rect. 16 16
33 11.61 temperature 15.0 30 > th dose independent rect. 12 21
38 11.64 precipitation 0.1 270 < th dose independent rect. 12 19
39 11.64 precipitation 0.1 270 < th dose dependent rect. 12 19
40 11.65 temperature 10.0 1440 > th dose independent rect. 10 3
43 11.65 atmosphere 995.0 1440 > th dose independent rect. 10 3
44 11.65 temperature 25.0 270 < th dose independent rect. 22 9
47 11.65 temperature 10.0 1440 > th dose independent rect. 13 21
50 11.65 precipitation 0.1 270 < th dose independent rect. 10 22
52 11.65 precipitation 0.1 270 < th dose dependent rect. 10 22
54 11.66 wind 1.0 30 > th dose independent rect. 9 3
58 11.67 temperature 10.0 30 > th dose independent rect. 9 3
61 11.67 atmosphere 995.0 30 > th dose independent rect. 9 3
62 11.67 atmosphere 1015.0 30 < th dose independent rect. 9 3
63 11.67 radiation 1.0 30 > th dose independent rect. 9 3
64 11.67 precipitation 0.1 30 < th dose independent rect. 9 3
68 11.67 precipitation 0.1 30 < th dose dependent rect. 9 3
71 11.68 wind 9.0 30 < th dose independent rect. 9 3
79 11.69 wind 1.0 270 > th dose independent rect. 12 19
81 11.69 wind 9.0 30 < th dose independent rect. 12 21
98 11.70 humidity 90.0 30 < th dose dependent rect. 12 20
102 11.71 humidity 80.0 720 < th dose independent rect. 19 8
104 11.71 humidity 80.0 1440 > th dose independent rect. 10 18
113 11.72 humidity 80.0 720 < th dose independent rect. 19 5
120 11.72 humidity 70.0 30 > th dose dependent rect. 11 16
124 11.73 humidity 50.0 30 > th dose independent rect. 9 3
131 11.73 humidity 70.0 270 > th dose dependent rect. 7 18
140 11.74 humidity 80.0 30 < th dose independent rect. 12 18
150 11.75 wind 9.0 270 < th dose independent rect. 7 5
153 11.75 humidity 80.0 270 > th dose independent rect. 7 18
154 11.75 humidity 80.0 1440 < th dose independent rect. 10 19
171 11.76 temperature 10.0 270 > th dose independent rect. 7 5
172 11.76 atmosphere 995.0 270 > th dose independent rect. 7 5
173 11.76 atmosphere 1015.0 270 < th dose independent rect. 7 5
174 11.76 precipitation 0.1 270 < th dose independent rect. 7 5
179 11.76 humidity 80.0 1440 < th dose independent rect. 10 17
187 11.76 precipitation 0.1 270 < th dose dependent rect. 7 5
191 11.77 humidity 50.0 270 > th dose independent rect. 7 5
197 11.77 radiation 1.0 30 < th dose dependent rect. 5 22
202 11.78 humidity 80.0 30 > th dose independent rect. 11 16
204 11.78 humidity 80.0 30 < th dose independent rect. 12 16
278 11.81 wind 9.0 270 < th dose independent rect. 12 19
280 11.81 atmosphere 995.0 30 > th dose independent rect. 12 21
282 11.81 radiation 1.0 30 < th dose independent rect. 5 22
283 11.81 temperature 20.0 30 > th dose dependent rect. 12 6
303 11.82 humidity 80.0 720 < th dose dependent rect. 19 9
308 11.83 humidity 80.0 1440 > th dose independent sin 15 NA
310 11.83 wind 7.0 270 < th dose independent rect. 8 2
335 11.83 temperature 15.0 30 > th dose dependent rect. 12 10
336 11.83 temperature 10.0 30 > th dose dependent rect. 12 21
339 11.84 humidity 80.0 1440 < th dose independent sin 16 NA
340 11.84 humidity 80.0 1440 > th dose independent rect. 20 1
345 11.84 temperature 25.0 270 > th dose independent rect. 20 6
348 11.84 humidity 80.0 30 < th dose independent rect. 12 12
368 11.84 temperature 20.0 30 > th dose dependent rect. 12 8
373 11.85 humidity 80.0 30 < th dose independent rect. 12 6
388 11.85 atmosphere 995.0 30 > th dose dependent rect. 18 9
389 11.85 radiation 10.0 90 < th dose dependent rect. 10 17
395 11.86 temperature 10.0 270 > th dose independent rect. 8 2
396 11.86 humidity 50.0 270 > th dose independent rect. 8 2
397 11.86 atmosphere 995.0 270 > th dose independent rect. 8 2
398 11.86 atmosphere 1015.0 270 < th dose independent rect. 8 2
399 11.86 precipitation 0.1 270 < th dose independent rect. 8 2
402 11.86 temperature 25.0 270 > th dose independent rect. 18 9
416 11.86 temperature 10.0 270 > th dose independent rect. 10 22
418 11.86 precipitation 0.1 270 < th dose dependent rect. 8 2
422 11.86 radiation 1.0 30 < th dose dependent rect. 7 20
441 11.87 radiation 1.0 10 > th dose dependent rect. 8 4
442 11.87 temperature 25.0 270 > th dose dependent rect. 22 5
456 11.88 humidity 80.0 30 < th dose independent rect. 12 10
466 11.88 humidity 80.0 1440 > th dose independent rect. 19 21
473 11.88 radiation 1.0 30 < th dose dependent rect. 13 14
484 11.89 humidity 90.0 30 < th dose independent rect. 9 3
491 11.89 humidity 50.0 270 > th dose independent rect. 12 19
494 11.89 temperature 10.0 720 > th dose dependent rect. 3 4
505 11.90 temperature 30.0 270 < th dose independent rect. 7 5
528 11.90 wind 5.0 90 < th dose independent rect. 8 19
534 11.90 humidity 50.0 30 > th dose independent rect. 12 21
535 11.90 humidity 80.0 1440 < th dose independent rect. 19 21
536 11.90 atmosphere 1015.0 30 < th dose independent rect. 12 21
570 11.91 precipitation 0.1 10 < th dose independent rect. 14 19
581 11.91 humidity 50.0 90 > th dose dependent rect. 17 10
582 11.91 radiation 1.0 30 < th dose dependent rect. 15 12
588 11.91 precipitation 0.1 10 < th dose dependent rect. 14 19
601 11.92 humidity 80.0 1440 > th dose independent rect. 17 11
618 11.92 temperature 30.0 270 < th dose dependent rect. 7 8
620 11.92 temperature 10.0 30 > th dose dependent rect. 3 15
621 11.92 humidity 70.0 1440 > th dose dependent rect. 11 17
622 11.92 humidity 90.0 10 < th dose dependent rect. 14 18
631 11.93 humidity 80.0 1440 < th dose independent rect. 17 11
643 11.93 atmosphere 995.0 270 > th dose independent rect. 12 19
650 11.93 humidity 80.0 4320 < th dose dependent rect. 21 1
651 11.93 temperature 20.0 720 > th dose dependent rect. 5 2
653 11.93 humidity 80.0 1440 > th dose dependent rect. 10 5
656 11.93 humidity 50.0 10 > th dose dependent rect. 18 9
687 11.94 humidity 80.0 1440 < th dose independent rect. 17 15
706 11.94 radiation 40.0 270 < th dose dependent rect. 15 11
736 11.95 precipitation 0.1 270 < th dose independent rect. 2 15
739 11.95 temperature 15.0 10 > th dose independent rect. 14 19
755 11.95 temperature 10.0 90 > th dose dependent rect. 18 9
759 11.95 radiation 1.0 30 > th dose dependent rect. 16 15
760 11.95 precipitation 0.1 270 < th dose dependent rect. 2 15
786 11.96 temperature 25.0 270 < th dose independent rect. 17 14
798 11.96 radiation 1.0 30 < th dose independent rect. 7 20
809 11.96 humidity 70.0 1440 > th dose dependent rect. 11 10
819 11.97 temperature 25.0 270 > th dose independent sin 11 NA
820 11.97 temperature 25.0 270 > th dose independent rect. 22 3
830 11.97 radiation 1.0 30 < th dose independent rect. 13 14
852 11.97 humidity 70.0 1440 > th dose dependent rect. 11 3
865 11.98 humidity 80.0 1440 > th dose independent no NA NA
888 11.98 atmosphere 995.0 270 > th dose independent rect. 16 10
934 11.99 temperature 25.0 30 > th dose independent rect. 12 6
978 11.99 humidity 80.0 1440 > th dose independent rect. 1 23
979 11.99 humidity 80.0 1440 > th dose independent rect. 4 23
989 11.99 wind 9.0 270 < th dose dependent rect. 7 5