Os07g0143700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to DEAD-Box RNA helicase-like protein.
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Os07g0143700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to DEAD-Box RNA helicase-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19.1 | 0.205 | 11.2 | -0.328 | 0.653 | 0.76 | -0.178 | -0.158 | -0.156 | 23 | 25.4 | 96 | -- | -- |
| 19.11 | 0.204 | 11.2 | -0.314 | 0.649 | 0.744 | -0.178 | -- | -0.153 | 23 | 25.4 | 98 | -- | -- |
| 19.23 | 0.204 | 11.2 | -0.308 | 0.652 | 0.755 | -- | -0.0274 | -0.153 | 23.1 | 25.4 | 98 | -- | -- |
| 19.23 | 0.204 | 11.2 | -0.304 | 0.652 | 0.752 | -- | -- | -0.151 | 23.1 | 25.4 | 99 | -- | -- |
| 32.01 | 0.264 | 11.2 | -0.273 | -- | 0.774 | -- | 0.472 | -0.192 | -- | 23.15 | 706 | -- | -- |
| 28.27 | 0.249 | 11.2 | -0.191 | 0.617 | -- | -0.188 | -- | -0.104 | 21.3 | -- | -- | -- | -- |
| 28.39 | 0.25 | 11.2 | -0.184 | 0.618 | -- | -- | -- | -0.104 | 21.2 | -- | -- | -- | -- |
| 32.04 | 0.264 | 11.2 | -0.375 | -- | 0.785 | -- | -- | -0.24 | -- | 21.93 | 695 | -- | -- |
| 21.55 | 0.216 | 11.2 | -- | 0.636 | 0.682 | -- | -- | -0.108 | 22.8 | 25.58 | 104 | -- | -- |
| 50.59 | 0.332 | 11.2 | -0.182 | -- | -- | -- | -- | -0.107 | -- | -- | -- | -- | -- |
| 29.28 | 0.253 | 11.2 | -- | 0.618 | -- | -- | -- | -0.0837 | 21.2 | -- | -- | -- | -- |
| 35.49 | 0.277 | 11.2 | -- | -- | 0.731 | -- | -- | -0.147 | -- | 24.13 | 681 | -- | -- |
| 51.46 | 0.335 | 11.2 | -- | -- | -- | -- | -- | -0.0869 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.16 | temperature | 10 | 270 | > th | dose dependent | sin | 2 | NA |
| 5 | 18.18 | temperature | 20 | 720 | > th | dose dependent | rect. | 2 | 9 |
| 12 | 18.39 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 14 |
| 14 | 18.43 | temperature | 20 | 270 | > th | dose dependent | rect. | 2 | 15 |
| 16 | 18.47 | temperature | 20 | 720 | > th | dose dependent | sin | 6 | NA |
| 99 | 18.94 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 8 |
| 123 | 19.03 | temperature | 25 | 90 | > th | dose dependent | rect. | 23 | 22 |
| 185 | 19.16 | temperature | 25 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 196 | 19.19 | temperature | 25 | 90 | > th | dose dependent | no | NA | NA |
| 205 | 19.19 | temperature | 25 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 220 | 19.21 | temperature | 25 | 10 | > th | dose dependent | rect. | 1 | 19 |
| 241 | 19.24 | temperature | 25 | 10 | > th | dose dependent | rect. | 3 | 19 |
| 248 | 19.25 | temperature | 25 | 10 | > th | dose dependent | rect. | 3 | 17 |
| 297 | 19.30 | temperature | 25 | 90 | > th | dose dependent | rect. | 9 | 23 |
| 322 | 19.33 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 13 |
| 380 | 19.42 | temperature | 30 | 720 | < th | dose dependent | sin | 6 | NA |
| 436 | 19.47 | temperature | 25 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 459 | 19.50 | temperature | 30 | 270 | < th | dose dependent | sin | 1 | NA |
| 513 | 19.54 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 3 |
| 588 | 19.61 | temperature | 25 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 592 | 19.62 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 744 | 19.81 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 15 |
| 770 | 19.84 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 4 |