Os07g0139400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : UDP-glucose 4-epimerase family protein.
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Os07g0139400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : UDP-glucose 4-epimerase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.72 | 0.229 | 11.9 | -0.86 | 0.655 | -0.917 | 0.695 | -0.151 | -0.0945 | 2.86 | 24.2 | 10 | -- | -- |
| 23.74 | 0.229 | 11.9 | -0.88 | 0.652 | -0.9 | 0.648 | -- | -0.0984 | 2.86 | 24.2 | 10 | -- | -- |
| 24.99 | 0.233 | 11.9 | -0.933 | 0.646 | -0.86 | -- | 0.347 | -0.106 | 2.9 | 24.24 | 10 | -- | -- |
| 25.15 | 0.234 | 11.9 | -0.891 | 0.654 | -0.897 | -- | -- | -0.102 | 2.94 | 24.19 | 10 | -- | -- |
| 46.99 | 0.321 | 11.9 | -0.856 | -- | -0.497 | -- | 0.559 | -0.0357 | -- | 23.8 | 11 | -- | -- |
| 35.45 | 0.279 | 11.9 | -0.677 | 0.521 | -- | 0.652 | -- | 0.0518 | 3.35 | -- | -- | -- | -- |
| 36.77 | 0.284 | 11.9 | -0.69 | 0.526 | -- | -- | -- | 0.0479 | 3.49 | -- | -- | -- | -- |
| 47.42 | 0.321 | 11.9 | -0.792 | -- | -0.589 | -- | -- | -0.0194 | -- | 23.39 | 60 | -- | -- |
| 44.42 | 0.312 | 11.9 | -- | 0.584 | -0.578 | -- | -- | 0.053 | 3.11 | 23.6 | 10 | -- | -- |
| 52.24 | 0.338 | 11.9 | -0.668 | -- | -- | -- | -- | 0.0618 | -- | -- | -- | -- | -- |
| 49.31 | 0.328 | 11.9 | -- | 0.512 | -- | -- | -- | 0.125 | 3.5 | -- | -- | -- | -- |
| 62.5 | 0.369 | 11.9 | -- | -- | -0.335 | -- | -- | 0.104 | -- | 22.5 | 10 | -- | -- |
| 64 | 0.373 | 11.9 | -- | -- | -- | -- | -- | 0.136 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.75 | temperature | 15 | 270 | > th | dose dependent | sin | 11 | NA |
| 5 | 21.96 | temperature | 30 | 270 | < th | dose dependent | sin | 12 | NA |
| 11 | 22.38 | temperature | 30 | 270 | < th | dose dependent | rect. | 17 | 13 |
| 21 | 22.66 | temperature | 15 | 720 | > th | dose dependent | rect. | 15 | 10 |
| 22 | 22.67 | temperature | 25 | 270 | < th | dose dependent | rect. | 11 | 19 |
| 25 | 22.78 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 8 |
| 47 | 23.00 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 7 |
| 85 | 23.18 | temperature | 25 | 90 | < th | dose dependent | rect. | 13 | 22 |
| 107 | 23.28 | temperature | 25 | 90 | < th | dose dependent | rect. | 15 | 20 |
| 133 | 23.37 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 14 |
| 139 | 23.39 | temperature | 10 | 720 | > th | dose dependent | sin | 16 | NA |
| 163 | 23.50 | temperature | 25 | 90 | < th | dose dependent | rect. | 17 | 18 |
| 206 | 23.60 | temperature | 25 | 10 | < th | dose dependent | rect. | 12 | 19 |
| 322 | 23.85 | temperature | 25 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 325 | 23.86 | temperature | 25 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 348 | 23.89 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 350 | 23.90 | temperature | 30 | 720 | < th | dose dependent | sin | 16 | NA |
| 359 | 23.91 | temperature | 25 | 10 | < th | dose dependent | no | NA | NA |
| 365 | 23.91 | temperature | 25 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 366 | 23.91 | temperature | 25 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 367 | 23.91 | temperature | 25 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 392 | 23.96 | temperature | 25 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 401 | 23.97 | temperature | 25 | 90 | < th | dose dependent | rect. | 7 | 23 |
| 413 | 23.99 | temperature | 25 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 485 | 24.14 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 8 |
| 584 | 24.34 | temperature | 25 | 270 | < th | dose dependent | rect. | 21 | 8 |
| 698 | 24.56 | temperature | 20 | 270 | > th | dose dependent | rect. | 18 | 14 |
| 903 | 24.96 | temperature | 25 | 720 | < th | dose independent | sin | 17 | NA |
| 993 | 25.10 | temperature | 20 | 10 | > th | dose independent | sin | 9 | NA |