Os07g0137000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Myb, DNA-binding domain containing protein.
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Os07g0137000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Myb, DNA-binding domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 540.65 | 1.09 | 4.52 | 3.9 | 0.764 | -1.95 | 1.28 | -0.882 | 2.44 | 14.8 | 23.71 | 21511 | 0.595 | -- |
| 541.96 | 1.08 | 4.52 | 3.82 | 0.759 | -1.95 | 1.23 | -- | 2.4 | 14.8 | 25.02 | 21505 | 0.315 | -- |
| 546.17 | 1.09 | 4.51 | 3.94 | 0.773 | -1.94 | -- | -0.734 | 2.44 | 14.7 | 24.47 | 21507 | 0.768 | -- |
| 547.16 | 1.09 | 4.52 | 3.86 | 0.766 | -1.96 | -- | -- | 2.4 | 14.8 | 24.7 | 21506 | 0.453 | -- |
| 557.06 | 1.1 | 4.56 | 3.86 | -- | -2.36 | -- | -0.938 | 2.28 | -- | 14.1 | 21891 | 1.51 | -- |
| 672.4 | 1.22 | 4.36 | 3.81 | 0.616 | -- | 1.1 | -- | 3.1 | 14.9 | -- | -- | -- | -- |
| 676.51 | 1.22 | 4.36 | 3.83 | 0.619 | -- | -- | -- | 3.1 | 14.8 | -- | -- | -- | -- |
| 553.57 | 1.1 | 4.58 | 4.01 | -- | -2.38 | -- | -- | 2.29 | -- | 15.07 | 21856 | 3.65 | -- |
| 894.27 | 1.39 | 4.59 | -- | 0.703 | -2.37 | -- | -- | 2.07 | 14.6 | 14.13 | 18720 | 0.0492 | -- |
| 698.65 | 1.24 | 4.36 | 3.81 | -- | -- | -- | -- | 3.09 | -- | -- | -- | -- | -- |
| 1063.58 | 1.53 | 4.45 | -- | 0.543 | -- | -- | -- | 2.68 | 14.8 | -- | -- | -- | -- |
| 721.85 | 1.25 | 4.74 | -- | -- | -3.53 | -- | -- | 1.66 | -- | 4.122 | 18973 | 0.0436 | -- |
| 1080.73 | 1.53 | 4.46 | -- | -- | -- | -- | -- | 2.66 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 502.22 | temperature | 30 | 43200 | > th | dose dependent | rect. | 18 | 16 |
| 2 | 502.50 | temperature | 30 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 17 | 503.60 | temperature | 30 | 43200 | < th | dose independent | rect. | 3 | 7 |
| 18 | 503.61 | temperature | 30 | 43200 | < th | dose independent | rect. | 19 | 15 |
| 19 | 503.62 | temperature | 30 | 43200 | < th | dose independent | rect. | 6 | 4 |
| 20 | 503.62 | temperature | 30 | 43200 | < th | dose independent | rect. | 24 | 10 |
| 21 | 503.62 | temperature | 30 | 43200 | < th | dose independent | rect. | 22 | 12 |
| 31 | 503.82 | temperature | 30 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 97 | 506.66 | radiation | 10 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 119 | 510.49 | radiation | 10 | 43200 | > th | dose independent | rect. | 9 | 4 |
| 123 | 510.83 | radiation | 10 | 43200 | > th | dose independent | rect. | 9 | 6 |
| 129 | 512.48 | wind | 1 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 132 | 512.68 | temperature | 30 | 43200 | > th | dose dependent | sin | 9 | NA |
| 174 | 515.42 | temperature | 25 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 199 | 516.61 | radiation | 10 | 43200 | > th | dose independent | rect. | 13 | 2 |
| 238 | 517.91 | wind | 1 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 248 | 518.65 | temperature | 30 | 43200 | > th | dose independent | sin | 9 | NA |
| 249 | 518.80 | temperature | 25 | 43200 | > th | dose dependent | rect. | 1 | 6 |
| 252 | 518.95 | temperature | 30 | 43200 | < th | dose independent | sin | 9 | NA |
| 273 | 520.13 | temperature | 25 | 43200 | > th | dose dependent | rect. | 22 | 9 |
| 275 | 520.38 | temperature | 25 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 282 | 520.87 | temperature | 25 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 302 | 521.53 | temperature | 25 | 43200 | > th | dose dependent | rect. | 22 | 6 |
| 411 | 523.45 | temperature | 30 | 43200 | > th | dose dependent | no | NA | NA |
| 412 | 523.45 | temperature | 30 | 43200 | > th | dose dependent | rect. | 8 | 11 |
| 554 | 523.68 | temperature | 25 | 43200 | > th | dose dependent | rect. | 3 | 1 |
| 567 | 523.99 | radiation | 10 | 43200 | > th | dose independent | sin | 21 | NA |
| 631 | 525.75 | temperature | 30 | 43200 | > th | dose dependent | rect. | 17 | 2 |
| 658 | 526.13 | temperature | 25 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 662 | 526.21 | temperature | 30 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 692 | 526.77 | temperature | 30 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 701 | 526.91 | temperature | 30 | 43200 | < th | dose independent | rect. | 18 | 10 |
| 702 | 526.92 | temperature | 30 | 43200 | < th | dose independent | rect. | 18 | 12 |
| 746 | 527.44 | temperature | 25 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 823 | 528.20 | temperature | 25 | 43200 | < th | dose independent | rect. | 1 | 3 |
| 824 | 528.22 | temperature | 25 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 827 | 528.33 | wind | 1 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 856 | 528.82 | temperature | 25 | 43200 | > th | dose independent | rect. | 5 | 2 |
| 882 | 529.19 | radiation | 10 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 898 | 529.29 | temperature | 25 | 43200 | > th | dose independent | rect. | 3 | 4 |
| 929 | 529.86 | wind | 5 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 997 | 530.75 | radiation | 10 | 43200 | > th | dose independent | rect. | 17 | 23 |