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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0136100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.42 (0.0737) R2 : 0.338
β1 : 0.984 (0.274) R2dD : 0.021 R2D : -0.00266
β2 : 4.16 (0.292) R2dC : 0.699 R2C : -0.155
β3 : 4.35 (0.377) R2dE : 0.47 R2E : -0.391
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.211 (0.164) R2dN8 : 0.00404 R2N8 : 0.0155
σ : 1.37
deviance : 869.86
__
_____
C
peak time of C : 19.1
E
wheather : temperature
threshold : 29.96
memory length : 707
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 0.217
open length of G : 2.6

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
869.57 1.39 7.43 0.951 4.18 4.35 -0.286 0.387 -0.245 19.1 30.11 712 0.15 2.76
869.41 1.37 7.42 0.984 4.24 4.41 -0.285 -- -0.223 19.1 30.03 707 0.218 2.62
869.05 1.37 7.43 0.934 4.18 4.4 -- 0.595 -0.243 19.1 29.93 709 0.199 2.6
869.86 1.37 7.42 0.984 4.16 4.35 -- -- -0.211 19.1 29.96 707 0.217 2.6
1088.1 1.54 7.28 1.3 -- 3.57 -- 0.832 0.0192 -- 29.17 1360 0.0161 3.15
1052.53 1.52 7.48 0.436 1.94 -- 0.567 -- -0.778 17 -- -- -- --
1053.35 1.52 7.47 0.437 1.94 -- -- -- -0.775 17 -- -- -- --
1052.69 1.51 7.37 0.968 -- 2.99 -- -- -0.374 -- 36.77 1327 0.0194 7.58
893.23 1.39 7.45 -- 4.31 4.22 -- -- -0.338 19.1 31 688 0.6 2.26
1251.09 1.65 7.45 0.367 -- -- -- -- -0.825 -- -- -- -- --
1058.38 1.52 7.49 -- 1.93 -- -- -- -0.824 17 -- -- -- --
1053.77 1.51 7.3 -- -- 2.63 -- -- -0.475 -- 61.42 1340 0.411 8.97
1254.64 1.65 7.46 -- -- -- -- -- -0.865 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 871.13 temperature 30 720 < th dose dependent rect. 24 3
11 887.04 temperature 30 720 < th dose dependent rect. 24 7
13 887.82 temperature 15 720 > th dose dependent rect. 4 1
18 895.10 temperature 15 720 > th dose dependent rect. 2 3
22 896.51 temperature 10 720 > th dose dependent rect. 2 6
27 898.83 temperature 10 30 > th dose dependent rect. 17 23
33 901.95 temperature 15 720 > th dose dependent rect. 22 10
43 904.50 temperature 10 720 > th dose dependent rect. 22 8
58 906.94 temperature 20 720 < th dose dependent rect. 24 13
77 908.61 temperature 25 720 < th dose dependent sin 8 NA
82 909.06 temperature 20 720 < th dose dependent sin 6 NA
230 915.92 temperature 20 720 > th dose independent rect. 4 1
239 916.26 temperature 20 720 > th dose independent rect. 2 7
333 919.97 temperature 15 30 > th dose dependent rect. 4 12
396 922.69 temperature 20 720 < th dose dependent rect. 5 1
421 923.85 temperature 20 720 > th dose independent rect. 3 11
427 924.19 temperature 15 720 > th dose dependent sin 9 NA
539 928.17 wind 1 43200 > th dose independent rect. 20 10
554 928.89 wind 1 43200 > th dose independent rect. 15 15
555 928.96 wind 1 43200 > th dose independent rect. 18 12
568 929.45 temperature 20 720 > th dose independent rect. 21 17
574 929.95 temperature 20 720 < th dose independent rect. 24 11
581 930.22 temperature 20 720 < th dose independent rect. 24 13
610 930.89 temperature 20 720 < th dose dependent no NA NA
615 931.06 atmosphere 1015 1440 < th dose independent rect. 17 1
623 931.26 humidity 90 4320 > th dose dependent rect. 23 1
631 931.61 radiation 1 4320 < th dose dependent rect. 7 1
647 932.19 temperature 20 720 > th dose independent rect. 22 11
658 932.53 atmosphere 1010 30 < th dose independent rect. 6 10
667 932.91 temperature 20 720 < th dose dependent rect. 9 23
670 933.10 temperature 20 720 < th dose dependent rect. 11 23
685 933.65 humidity 90 4320 > th dose dependent rect. 21 4
687 933.70 temperature 20 720 > th dose independent sin 7 NA
724 934.70 temperature 20 720 < th dose dependent rect. 3 23
737 935.09 wind 1 43200 < th dose independent rect. 22 7
744 935.30 temperature 10 720 > th dose dependent rect. 21 17
769 935.95 temperature 20 720 < th dose independent sin 6 NA
776 936.09 wind 1 43200 < th dose independent rect. 20 9
813 937.04 wind 9 30 < th dose independent rect. 17 23
838 937.84 temperature 20 720 < th dose independent rect. 24 5
863 938.38 temperature 15 270 > th dose dependent rect. 2 11
871 938.81 wind 1 43200 < th dose independent rect. 18 12
877 938.90 temperature 20 720 < th dose independent rect. 1 1
895 939.32 wind 5 30 > th dose dependent rect. 16 1
897 939.37 atmosphere 1005 30 > th dose dependent rect. 16 1
915 939.78 temperature 20 720 < th dose independent rect. 24 20
920 939.91 atmosphere 1005 30 > th dose independent rect. 16 1
928 939.97 temperature 25 270 < th dose dependent rect. 8 1
937 940.19 wind 1 43200 < th dose independent rect. 13 17
950 940.47 wind 7 30 > th dose independent rect. 16 1
951 940.48 humidity 80 43200 > th dose independent rect. 18 1
957 940.56 temperature 30 30 < th dose dependent rect. 16 1
985 941.17 temperature 30 30 < th dose independent rect. 16 1