Os07g0134600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase domain containing protein.
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Os07g0134600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 110.4 | 0.494 | 7.08 | 0.649 | 1.02 | 3.43 | 0.266 | 6.58 | 0.62 | 22.7 | 0.8616 | 1423 | -- | -- |
| 124.38 | 0.519 | 7.01 | 1.49 | 1.25 | 2.49 | 0.868 | -- | 0.764 | 22.9 | 2.821 | 1381 | -- | -- |
| 110.22 | 0.489 | 7.11 | 0.608 | 0.999 | 3.85 | -- | 7.96 | 0.608 | 22.8 | 0.547 | 1426 | -- | -- |
| 119.11 | 0.508 | 6.99 | 1.25 | 1.36 | 2.4 | -- | -- | 0.753 | 22.6 | 2.839 | 1362 | -- | -- |
| 134.55 | 0.54 | 7.05 | 0.693 | -- | 4 | -- | 7.43 | 0.667 | -- | 0.7666 | 1494 | -- | -- |
| 180.44 | 0.63 | 7.04 | 0.814 | 0.856 | -- | -0.211 | -- | 0.447 | 22.5 | -- | -- | -- | -- |
| 180.61 | 0.629 | 7.04 | 0.823 | 0.858 | -- | -- | -- | 0.448 | 22.4 | -- | -- | -- | -- |
| 131.21 | 0.534 | 6.93 | 1.26 | -- | 2.72 | -- | -- | 0.844 | -- | 3.17 | 1536 | -- | -- |
| 151.59 | 0.573 | 7.01 | -- | 0.831 | 1.57 | -- | -- | 0.569 | 22.6 | 5.416 | 1452 | -- | -- |
| 225.6 | 0.702 | 7.02 | 0.838 | -- | -- | -- | -- | 0.451 | -- | -- | -- | -- | -- |
| 198.48 | 0.659 | 7.06 | -- | 0.863 | -- | -- | -- | 0.357 | 22.5 | -- | -- | -- | -- |
| 166.34 | 0.601 | 6.97 | -- | -- | 2.17 | -- | -- | 0.669 | -- | 4.462 | 1555 | -- | -- |
| 244.1 | 0.729 | 7.04 | -- | -- | -- | -- | -- | 0.358 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 107.93 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 22 |
| 8 | 109.06 | radiation | 1 | 1440 | < th | dose dependent | sin | 23 | NA |
| 16 | 110.05 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 21 |
| 17 | 110.08 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 21 |
| 19 | 110.11 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 19 |
| 20 | 110.13 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 13 |
| 22 | 110.16 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 19 |
| 27 | 110.55 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 16 |
| 28 | 110.57 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 19 |
| 43 | 110.99 | radiation | 1 | 1440 | < th | dose dependent | rect. | 20 | 22 |
| 45 | 111.00 | radiation | 1 | 1440 | < th | dose dependent | rect. | 23 | 19 |
| 77 | 111.37 | radiation | 1 | 1440 | < th | dose dependent | rect. | 23 | 22 |
| 84 | 111.40 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 98 | 111.47 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 118 | 112.25 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 13 |
| 119 | 112.27 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 17 |
| 120 | 112.28 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 11 |
| 185 | 113.60 | radiation | 1 | 1440 | > th | dose independent | sin | 23 | NA |
| 186 | 113.60 | radiation | 1 | 1440 | < th | dose independent | sin | 23 | NA |
| 235 | 114.61 | humidity | 90 | 43200 | < th | dose independent | rect. | 19 | 10 |
| 236 | 114.61 | radiation | 1 | 1440 | < th | dose dependent | sin | 15 | NA |
| 244 | 114.76 | humidity | 90 | 43200 | < th | dose independent | rect. | 20 | 8 |
| 249 | 115.03 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 13 |
| 254 | 115.25 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 16 |
| 255 | 115.25 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 19 |
| 266 | 115.38 | radiation | 1 | 1440 | < th | dose independent | rect. | 2 | 16 |
| 269 | 115.41 | radiation | 1 | 1440 | > th | dose independent | rect. | 5 | 13 |
| 271 | 115.42 | radiation | 1 | 1440 | < th | dose independent | rect. | 20 | 22 |
| 276 | 115.43 | radiation | 1 | 1440 | < th | dose independent | rect. | 23 | 19 |
| 289 | 115.56 | radiation | 1 | 1440 | < th | dose independent | rect. | 2 | 22 |
| 302 | 115.59 | temperature | 25 | 14400 | > th | dose dependent | rect. | 11 | 1 |
| 311 | 115.61 | radiation | 1 | 1440 | < th | dose independent | rect. | 23 | 22 |
| 316 | 115.63 | radiation | 1 | 1440 | < th | dose independent | no | NA | NA |
| 319 | 115.63 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 332 | 115.68 | radiation | 20 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 384 | 116.00 | radiation | 1 | 1440 | > th | dose independent | no | NA | NA |
| 432 | 116.01 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 435 | 116.04 | humidity | 80 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 437 | 116.10 | humidity | 80 | 43200 | > th | dose dependent | rect. | 16 | 11 |
| 439 | 116.11 | humidity | 80 | 43200 | > th | dose dependent | rect. | 17 | 9 |
| 444 | 116.16 | temperature | 25 | 14400 | > th | dose independent | rect. | 18 | 3 |
| 446 | 116.17 | humidity | 90 | 43200 | > th | dose independent | rect. | 20 | 9 |
| 462 | 116.31 | temperature | 25 | 14400 | < th | dose independent | rect. | 18 | 3 |
| 465 | 116.39 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 505 | 116.66 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 518 | 116.68 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 547 | 116.73 | temperature | 25 | 14400 | > th | dose dependent | rect. | 24 | 13 |
| 574 | 116.82 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 6 |
| 608 | 116.97 | temperature | 25 | 14400 | > th | dose dependent | sin | 4 | NA |
| 637 | 117.03 | temperature | 25 | 14400 | > th | dose independent | rect. | 17 | 9 |
| 660 | 117.07 | temperature | 25 | 14400 | > th | dose dependent | rect. | 17 | 21 |
| 684 | 117.13 | temperature | 25 | 14400 | > th | dose dependent | rect. | 8 | 18 |
| 687 | 117.13 | temperature | 25 | 14400 | > th | dose dependent | rect. | 22 | 21 |
| 688 | 117.14 | temperature | 20 | 14400 | > th | dose dependent | rect. | 4 | 1 |
| 705 | 117.16 | temperature | 25 | 14400 | > th | dose independent | rect. | 18 | 7 |
| 716 | 117.17 | humidity | 80 | 43200 | > th | dose dependent | sin | 15 | NA |
| 739 | 117.19 | temperature | 25 | 14400 | > th | dose dependent | rect. | 7 | 12 |
| 785 | 117.22 | temperature | 25 | 14400 | > th | dose dependent | no | NA | NA |
| 786 | 117.22 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 3 |
| 840 | 117.26 | temperature | 25 | 14400 | > th | dose dependent | rect. | 11 | 23 |
| 855 | 117.28 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 8 |
| 866 | 117.30 | temperature | 25 | 14400 | < th | dose independent | rect. | 17 | 9 |
| 868 | 117.30 | humidity | 90 | 43200 | > th | dose dependent | rect. | 20 | 2 |
| 873 | 117.31 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 10 |
| 881 | 117.32 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 13 |
| 887 | 117.33 | temperature | 25 | 14400 | < th | dose independent | rect. | 18 | 7 |
| 888 | 117.33 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 891 | 117.33 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 12 |
| 904 | 117.34 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 15 |
| 912 | 117.35 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 10 |
| 922 | 117.37 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 16 |
| 929 | 117.39 | humidity | 80 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 941 | 117.40 | humidity | 90 | 43200 | > th | dose dependent | rect. | 20 | 4 |
| 953 | 117.42 | humidity | 90 | 43200 | < th | dose independent | sin | 13 | NA |
| 967 | 117.43 | temperature | 25 | 14400 | > th | dose independent | rect. | 17 | 17 |