BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0134600 Os07g0134600|J065070D13
         (89 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G39270.1  | chr4:18276874-18279710 FORWARD LENGTH=865           60   2e-10
AT2G16250.1  | chr2:7039682-7042933 REVERSE LENGTH=916             55   7e-09

>AT4G39270.1 | chr4:18276874-18279710 FORWARD LENGTH=865
          Length = 864

 Score = 60.1 bits (144), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 28/45 (62%), Positives = 34/45 (75%)

Query: 27  HRDIQATSVLLDDKFEVRLGSMSDVCAQQSGGSQSVFSRLLRSSR 71
           HRDIQA+S+LLDDKFEVRLGS S  C Q++ G     +RLLR S+
Sbjct: 631 HRDIQASSILLDDKFEVRLGSFSKACHQENNGRPRKIARLLRLSQ 675



>AT2G16250.1 | chr2:7039682-7042933 REVERSE LENGTH=916
          Length = 915

 Score = 55.1 bits (131), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 28/42 (66%), Positives = 33/42 (78%), Gaps = 1/42 (2%)

Query: 27  HRDIQATSVLLDDKFEVRLGSMSDVCAQQSGGSQSVFSRLLR 68
           HRD+QA+S+LLDDKFEVRLGS+S+  A Q    QS  SRLLR
Sbjct: 655 HRDVQASSILLDDKFEVRLGSLSEAYA-QGDAYQSRISRLLR 695



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.327    0.137    0.442 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,890,006
Number of extensions: 59845
Number of successful extensions: 772
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 772
Number of HSP's successfully gapped: 2
Length of query: 89
Length of database: 11,106,569
Length adjustment: 60
Effective length of query: 29
Effective length of database: 9,461,609
Effective search space: 274386661
Effective search space used: 274386661
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 104 (44.7 bits)