Os07g0134400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Trimeric LpxA-like domain containing protein.
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Os07g0134400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Trimeric LpxA-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 53.14 | 0.343 | 9.15 | -1.59 | 0.905 | -1.5 | 0.0866 | -0.92 | 0.124 | 1.49 | 20.79 | 74 | -- | -- |
| 53.67 | 0.341 | 9.16 | -1.62 | 0.891 | -1.23 | -0.0338 | -- | 0.118 | 1.47 | 20.8 | 73 | -- | -- |
| 53.17 | 0.34 | 9.15 | -1.6 | 0.903 | -1.48 | -- | -0.853 | 0.124 | 1.49 | 20.77 | 73 | -- | -- |
| 53.67 | 0.341 | 9.16 | -1.63 | 0.889 | -1.23 | -- | -- | 0.12 | 1.47 | 20.8 | 68 | -- | -- |
| 88.97 | 0.439 | 9.18 | -1.75 | -- | -1.17 | -- | -0.102 | 0.0254 | -- | 22.38 | 916 | -- | -- |
| 64.95 | 0.378 | 9.14 | -1.42 | 0.793 | -- | 0.0389 | -- | 0.214 | 1.49 | -- | -- | -- | -- |
| 64.96 | 0.377 | 9.14 | -1.42 | 0.793 | -- | -- | -- | 0.214 | 1.48 | -- | -- | -- | -- |
| 88.64 | 0.438 | 9.17 | -1.69 | -- | -1.12 | -- | -- | 0.0674 | -- | 22.51 | 896 | -- | -- |
| 116.74 | 0.506 | 9.11 | -- | 0.803 | -0.357 | -- | -- | 0.347 | 1.4 | 21.3 | 10 | -- | -- |
| 103.53 | 0.475 | 9.13 | -1.39 | -- | -- | -- | -- | 0.231 | -- | -- | -- | -- | -- |
| 117.96 | 0.508 | 9.1 | -- | 0.768 | -- | -- | -- | 0.372 | 1.42 | -- | -- | -- | -- |
| 152.55 | 0.575 | 9.1 | -- | -- | -0.832 | -- | -- | 0.378 | -- | 15.43 | 89 | -- | -- |
| 154.24 | 0.58 | 9.09 | -- | -- | -- | -- | -- | 0.385 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 49.74 | humidity | 90.0 | 1440 | > th | dose dependent | rect. | 7 | 11 |
| 7 | 50.68 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 9 | 51.00 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 10 | 51.00 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 14 | 51.28 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 15 | 3 |
| 15 | 51.28 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 15 | 3 |
| 16 | 51.31 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 6 | 13 |
| 17 | 51.38 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 8 | 11 |
| 19 | 51.43 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 7 | 10 |
| 21 | 51.50 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 9 | 13 |
| 26 | 51.75 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 12 | 3 |
| 30 | 51.77 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 40 | 51.94 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 15 | 3 |
| 46 | 51.98 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 6 | 10 |
| 49 | 52.03 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 5 | 8 |
| 54 | 52.04 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 2 | 19 |
| 55 | 52.05 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 5 | 8 |
| 61 | 52.08 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 3 |
| 64 | 52.11 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 3 |
| 65 | 52.11 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 3 |
| 66 | 52.11 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 3 |
| 72 | 52.13 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 7 | 10 |
| 80 | 52.19 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 3 |
| 90 | 52.29 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 93 | 52.32 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 7 | 8 |
| 94 | 52.32 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 99 | 52.36 | temperature | 20.0 | 270 | < th | dose dependent | sin | 18 | NA |
| 107 | 52.42 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 9 |
| 116 | 52.48 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 124 | 52.52 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 9 | 5 |
| 134 | 52.58 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 8 | 11 |
| 147 | 52.65 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 5 | 6 |
| 152 | 52.67 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 5 | 6 |
| 154 | 52.67 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 22 |
| 159 | 52.69 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 10 | 20 |
| 161 | 52.70 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 9 | 6 |
| 170 | 52.72 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 6 | 4 |
| 171 | 52.72 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 7 | 6 |
| 172 | 52.72 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 7 | 6 |
| 177 | 52.74 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 3 | 7 |
| 178 | 52.74 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 8 | 11 |
| 181 | 52.74 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 8 | 11 |
| 193 | 52.78 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 11 |
| 201 | 52.81 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 0 | NA |
| 217 | 52.85 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 222 | 52.86 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 11 |
| 223 | 52.86 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 11 |
| 225 | 52.87 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 229 | 52.88 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 6 | 15 |
| 230 | 52.88 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 17 | 17 |
| 232 | 52.89 | humidity | 90.0 | 1440 | > th | dose independent | sin | 0 | NA |
| 245 | 52.93 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 14 | 5 |
| 248 | 52.94 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 6 | 4 |
| 256 | 52.96 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 5 |
| 261 | 52.97 | humidity | 90.0 | 1440 | > th | dose dependent | sin | 23 | NA |
| 266 | 52.98 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 267 | 52.98 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 9 |
| 270 | 52.98 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 275 | 53.00 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 6 | 13 |
| 277 | 53.00 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 6 | 13 |
| 285 | 53.01 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 15 | 20 |
| 290 | 53.02 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 9 | 7 |
| 303 | 53.03 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 16 | 1 |
| 334 | 53.07 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 11 |
| 341 | 53.08 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 5 | 7 |
| 343 | 53.08 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 5 | 7 |
| 349 | 53.09 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 12 | 4 |
| 368 | 53.10 | wind | 9.0 | 14400 | < th | dose independent | rect. | 5 | 6 |
| 369 | 53.10 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 16 | 1 |
| 377 | 53.11 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 5 |
| 380 | 53.11 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 5 |
| 390 | 53.12 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 399 | 53.12 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 4 | 22 |
| 413 | 53.14 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 5 |
| 416 | 53.14 | humidity | 90.0 | 14400 | > th | dose dependent | no | NA | NA |
| 472 | 53.20 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 473 | 53.20 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 5 | 11 |
| 475 | 53.20 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 491 | 53.22 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 19 | 2 |
| 526 | 53.26 | wind | 9.0 | 14400 | > th | dose independent | rect. | 5 | 6 |
| 585 | 53.31 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 15 | 13 |
| 610 | 53.34 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 6 | 8 |
| 613 | 53.34 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 7 | 4 |
| 643 | 53.36 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 3 | 8 |
| 645 | 53.36 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 13 | 15 |
| 648 | 53.36 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 664 | 53.38 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 678 | 53.39 | temperature | 20.0 | 10 | < th | dose dependent | sin | 16 | NA |
| 702 | 53.40 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 6 | 8 |
| 704 | 53.40 | temperature | 20.0 | 30 | < th | dose dependent | no | NA | NA |
| 743 | 53.41 | temperature | 20.0 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 749 | 53.42 | temperature | 20.0 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 754 | 53.43 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 12 | 7 |
| 781 | 53.46 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 9 | 6 |
| 786 | 53.46 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 15 | NA |
| 792 | 53.46 | temperature | 20.0 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 859 | 53.51 | humidity | 90.0 | 1440 | < th | dose independent | sin | 1 | NA |
| 896 | 53.54 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 2 | 19 |
| 944 | 53.58 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 1 | 3 |