BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0134400 Os07g0134400|AK073204
         (132 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G21220.1  | chr4:11316978-11319067 REVERSE LENGTH=305          174   2e-44
AT4G05210.1  | chr4:2682867-2684867 FORWARD LENGTH=331            166   2e-42

>AT4G21220.1 | chr4:11316978-11319067 REVERSE LENGTH=305
          Length = 304

 Score =  174 bits (440), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 78/108 (72%), Positives = 95/108 (87%)

Query: 21  SWRDTVIGDETKIDNLVQIGHNVVIGKCCMICGQAGIAGSATLGDYVTLGGRVAIRDHVS 80
           SWR+TVI D+TKIDNLVQIGHNV+IGKCC++CGQ GIAGS T+GDYV LGGR A+RDHVS
Sbjct: 196 SWRETVIEDDTKIDNLVQIGHNVIIGKCCLLCGQVGIAGSVTIGDYVALGGRAAVRDHVS 255

Query: 81  IASKVRLAANSSVTKDIQKPGDYGGFPAVPINEWRRQTANLRIFSKKD 128
           I SKVRLAANS VT++I +PGD+GGFPAVPI+EWR+Q    +I +K++
Sbjct: 256 IVSKVRLAANSCVTRNITEPGDFGGFPAVPIHEWRKQIVRAQIANKRE 303



>AT4G05210.1 | chr4:2682867-2684867 FORWARD LENGTH=331
          Length = 330

 Score =  166 bits (421), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 83/132 (62%), Positives = 95/132 (71%), Gaps = 25/132 (18%)

Query: 21  SWRDTVIGDETKIDNLVQIGHNVVIGKCCMICGQAGIAGSATLGDYVTLGGRVAIRDHVS 80
           SWRDTVIGD+TKIDNLVQIGHNV+IGKCC+ CGQ GIAGSA +GD+V LGGRVA+RDHVS
Sbjct: 197 SWRDTVIGDDTKIDNLVQIGHNVIIGKCCLFCGQVGIAGSAEIGDFVALGGRVAVRDHVS 256

Query: 81  IASKVRLAANSSVTKDIQKPGDYGGFPA-------------------------VPINEWR 115
           I SKVRLAANS VTK+I +PGDYGGFPA                         VPI++WR
Sbjct: 257 IVSKVRLAANSCVTKNITEPGDYGGFPAYKKTEPDSAFASDKHCFILQKILIQVPIHQWR 316

Query: 116 RQTANLRIFSKK 127
           RQ    +I SK+
Sbjct: 317 RQIVEAQISSKR 328



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.138    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,835,468
Number of extensions: 97825
Number of successful extensions: 199
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 202
Number of HSP's successfully gapped: 2
Length of query: 132
Length of database: 11,106,569
Length adjustment: 87
Effective length of query: 45
Effective length of database: 8,721,377
Effective search space: 392461965
Effective search space used: 392461965
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 106 (45.4 bits)