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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0132300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.87 (0.0655) R2 : 0.697
β1 : -1.89 (0.247) R2dD : 0.0432 R2D : -0.0669
β2 : 0.635 (0.162) R2dC : 0.0104 R2C : -0.0854
β3 : 4.36 (0.185) R2dE : 0.393 R2E : 0.216
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 2.88 (0.14) R2dN8 : 0.379 R2N8 : 0.323
σ : 1.22
deviance : 688.74
__
_____
C
peak time of C : 9.18
E
wheather : temperature
threshold : 26.73
memory length : 1286
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
687.4 1.23 4.81 -1.5 0.565 4.15 -0.99 1.31 3.07 10.1 27.25 1300 -- --
686.8 1.22 4.87 -1.77 0.571 4.39 -0.925 -- 2.94 10.1 26.84 1290 -- --
688.47 1.22 4.82 -1.47 0.621 4.17 -- 1.76 2.98 9.31 26.79 1286 -- --
688.74 1.22 4.87 -1.89 0.635 4.36 -- -- 2.88 9.18 26.73 1286 -- --
708.61 1.24 4.83 -1.42 -- 4.04 -- 1.9 2.99 -- 26.84 1323 -- --
1471.33 1.8 4.86 -0.475 0.635 -- 3.4 -- 2.97 3.8 -- -- -- --
1501.39 1.81 4.86 -0.522 0.728 -- -- -- 2.95 5.22 -- -- -- --
709.32 1.24 4.89 -1.89 -- 4.25 -- -- 2.9 -- 26.82 1323 -- --
773.01 1.29 4.77 -- 0.598 3.93 -- -- 3.34 9.03 27.8 1286 -- --
1529.12 1.83 4.87 -0.497 -- -- -- -- 2.97 -- -- -- -- --
1508.59 1.82 4.85 -- 0.719 -- -- -- 3.01 5.24 -- -- -- --
793.3 1.31 4.78 -- -- 3.85 -- -- 3.35 -- 27.86 1310 -- --
1535.63 1.83 4.86 -- -- -- -- -- 3.03 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 696.23 temperature 25 720 > th dose dependent rect. 18 15
2 703.18 temperature 25 1440 > th dose dependent rect. 16 18
14 713.09 radiation 20 1440 > th dose independent rect. 16 15
20 715.09 temperature 30 1440 < th dose independent rect. 17 20
21 715.71 temperature 25 1440 > th dose dependent rect. 18 1
28 717.49 temperature 30 1440 > th dose dependent rect. 11 8
42 717.74 temperature 25 1440 > th dose dependent rect. 16 8
65 718.21 temperature 30 1440 > th dose dependent rect. 16 23
85 718.85 temperature 30 1440 > th dose independent rect. 17 20
86 718.89 temperature 30 1440 > th dose dependent rect. 13 2
88 718.94 temperature 30 1440 > th dose dependent sin 21 NA
117 719.66 temperature 30 1440 > th dose dependent no NA NA
210 719.73 temperature 25 1440 > th dose dependent rect. 17 4
217 720.06 radiation 20 1440 > th dose independent rect. 16 1
287 722.34 temperature 25 1440 > th dose dependent sin 10 NA
288 722.42 temperature 30 1440 > th dose independent rect. 16 3
310 722.93 temperature 30 1440 < th dose independent rect. 16 10
316 723.23 temperature 30 1440 < th dose independent rect. 16 5
330 723.80 temperature 30 1440 < th dose independent rect. 16 16
385 725.48 temperature 30 1440 < th dose independent rect. 9 4
391 725.99 temperature 25 1440 > th dose dependent rect. 7 1
394 726.31 temperature 30 1440 < th dose independent rect. 9 18
395 726.32 temperature 30 1440 < th dose independent rect. 9 16
398 726.38 temperature 30 1440 < th dose independent rect. 9 23
405 726.51 temperature 30 1440 < th dose independent rect. 9 14
408 726.55 temperature 30 1440 < th dose independent rect. 9 12
444 727.72 temperature 30 1440 > th dose independent rect. 9 10
496 728.55 temperature 25 1440 > th dose dependent rect. 6 3
499 728.75 temperature 25 1440 > th dose dependent rect. 3 6
500 728.78 temperature 30 1440 > th dose independent rect. 9 4
557 730.37 temperature 30 1440 < th dose independent sin 10 NA
571 730.97 temperature 30 1440 < th dose independent rect. 11 1
572 730.97 temperature 30 1440 < th dose independent rect. 6 21
573 730.98 temperature 30 1440 < th dose independent rect. 6 19
586 731.07 temperature 30 1440 < th dose independent rect. 2 23
589 731.09 temperature 30 1440 < th dose independent rect. 22 23
596 731.12 temperature 30 1440 < th dose independent rect. 24 23
597 731.13 temperature 30 1440 < th dose independent no NA NA
600 731.15 temperature 30 1440 < th dose independent rect. 24 21
608 731.18 temperature 30 1440 < th dose independent rect. 20 23
612 731.20 temperature 30 1440 < th dose independent rect. 6 15
639 731.29 temperature 30 1440 < th dose independent rect. 2 19
709 733.06 temperature 30 1440 > th dose independent no NA NA
813 733.46 temperature 30 1440 < th dose independent sin 21 NA
828 733.97 temperature 30 1440 > th dose independent sin 19 NA
886 735.36 temperature 30 1440 < th dose independent rect. 22 16
888 735.38 temperature 30 1440 < th dose independent rect. 6 8
892 735.44 temperature 30 1440 < th dose independent rect. 24 14
903 735.67 temperature 30 1440 < th dose independent rect. 2 12
983 737.26 temperature 30 1440 > th dose independent sin 10 NA
995 737.81 radiation 20 1440 < th dose independent rect. 16 1