BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0132300 Os07g0132300|J065119H15
         (146 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G37810.1  | chr4:17780970-17781544 FORWARD LENGTH=129           55   9e-09

>AT4G37810.1 | chr4:17780970-17781544 FORWARD LENGTH=129
          Length = 128

 Score = 55.5 bits (132), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 48/116 (41%), Gaps = 16/116 (13%)

Query: 35  VGNIKEEPDE---TIGEKXXXXXXGRRLIGSRPPRCERV-CMSCGHCEAXXXXXXXXXXX 90
           + N + EPD    T           R LIGSRPPRCERV C SCGHCEA           
Sbjct: 25  MANGRPEPDSVEFTKSGDQDVKMMMRGLIGSRPPRCERVRCRSCGHCEAIQVPTNPQTKL 84

Query: 91  XXXXXXXXXXXXXXXXHXXXXXXXXXXXXFTYRVNGLSNYKPLSWKCKCGGIILDP 146
                                        +T R +  +NYKP+SWKCKCG  I +P
Sbjct: 85  HSPLTT-----------SSSSSSETIHLDYT-RGDDSTNYKPMSWKCKCGNSIYNP 128



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.140    0.462 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,040,885
Number of extensions: 46904
Number of successful extensions: 72
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 1
Length of query: 146
Length of database: 11,106,569
Length adjustment: 89
Effective length of query: 57
Effective length of database: 8,666,545
Effective search space: 493993065
Effective search space used: 493993065
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 107 (45.8 bits)