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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0119800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF538 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.61 (0.0398) R2 : 0.415
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.649 (0.105) R2dC : 0.0506 R2C : 0.00501
β3 : 3.14 (0.208) R2dE : 0.296 R2E : 0.215
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.771 (0.084) R2dN8 : 0.141 R2N8 : 0.0862
σ : 0.747
deviance : 257.48
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_____
C
peak time of C : 5.97
E
wheather : wind
threshold : 5.86
memory length : 2139
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
244.71 0.735 9.7 -0.36 0.596 3.66 0.324 4.98 0.664 6.09 5.812 2321 -- --
251.61 0.739 9.62 -0.439 0.659 2.92 0.23 -- 0.709 5.76 5.8 2113 -- --
244.96 0.729 9.7 -0.36 0.595 3.67 -- 5.02 0.663 6.08 5.813 2322 -- --
251.36 0.738 9.62 -0.514 0.654 2.9 -- -- 0.706 5.9 5.867 2139 -- --
261.71 0.753 9.72 -0.326 -- 3.61 -- 5.35 0.682 -- 5.8 2536 -- --
345.35 0.871 9.66 -1.19 0.614 -- -0.0815 -- 0.545 4.26 -- -- -- --
345.37 0.87 9.66 -1.19 0.614 -- -- -- 0.546 4.29 -- -- -- --
269.9 0.765 9.61 -0.382 -- 2.85 -- -- 0.756 -- 5.9 2356 -- --
257.48 0.747 9.61 -- 0.649 3.14 -- -- 0.771 5.97 5.86 2139 -- --
365.66 0.894 9.67 -1.16 -- -- -- -- 0.562 -- -- -- -- --
382.54 0.915 9.63 -- 0.591 -- -- -- 0.678 4.33 -- -- -- --
274.46 0.772 9.61 -- -- 2.89 -- -- 0.804 -- 5.836 2492 -- --
401.34 0.935 9.64 -- -- -- -- -- 0.691 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 246.21 wind 5.0 4320 > th dose dependent rect. 21 2
3 249.34 wind 7.0 4320 > th dose independent rect. 8 1
4 249.78 wind 5.0 4320 > th dose dependent rect. 18 10
13 253.60 wind 5.0 4320 > th dose independent rect. 21 2
16 253.77 wind 7.0 4320 > th dose dependent rect. 8 1
17 254.27 wind 7.0 4320 < th dose independent rect. 18 10
18 254.35 wind 7.0 1440 < th dose independent rect. 3 7
19 254.36 wind 7.0 1440 > th dose independent rect. 2 8
20 254.40 wind 7.0 1440 > th dose independent rect. 4 5
24 254.56 wind 7.0 4320 < th dose independent rect. 8 1
26 254.74 wind 5.0 4320 > th dose dependent rect. 18 15
30 254.98 wind 5.0 4320 > th dose dependent sin 12 NA
35 255.22 wind 7.0 4320 > th dose independent rect. 18 10
49 256.29 wind 7.0 4320 > th dose independent rect. 7 3
50 256.31 wind 7.0 4320 < th dose independent rect. 21 3
65 256.96 wind 7.0 1440 > th dose independent rect. 23 11
71 257.22 wind 5.0 4320 > th dose independent rect. 20 6
78 257.70 wind 7.0 1440 < th dose independent rect. 22 12
79 257.71 wind 7.0 4320 < th dose independent rect. 18 4
80 257.73 wind 7.0 4320 < th dose independent rect. 18 16
83 257.84 wind 7.0 4320 > th dose independent rect. 18 4
91 258.03 wind 7.0 4320 < th dose independent rect. 19 1
93 258.05 wind 7.0 4320 > th dose independent rect. 18 16
105 258.31 wind 5.0 4320 > th dose independent sin 12 NA
147 259.35 wind 7.0 4320 < th dose independent sin 11 NA
151 259.50 wind 7.0 4320 > th dose independent rect. 19 1
179 260.09 wind 7.0 1440 > th dose dependent rect. 3 6
203 260.80 wind 7.0 4320 > th dose dependent rect. 19 1
214 261.03 wind 9.0 4320 > th dose dependent rect. 16 14
239 261.31 wind 9.0 4320 > th dose dependent rect. 16 7
276 261.84 wind 3.0 4320 > th dose dependent rect. 24 1
429 264.02 temperature 15.0 720 > th dose dependent rect. 17 10
431 264.06 wind 5.0 1440 > th dose independent rect. 20 17
521 264.96 precipitation 0.1 14400 > th dose independent rect. 21 1
525 265.04 wind 5.0 1440 < th dose independent rect. 20 17
539 265.26 precipitation 0.1 14400 < th dose independent rect. 21 1
540 265.26 precipitation 0.1 14400 < th dose dependent rect. 21 1
557 265.44 temperature 20.0 720 > th dose dependent sin 13 NA
558 265.47 wind 7.0 1440 > th dose dependent rect. 23 11
565 265.54 temperature 20.0 720 > th dose dependent rect. 16 16
602 265.92 precipitation 0.1 14400 > th dose dependent rect. 21 1
611 265.99 temperature 20.0 720 > th dose dependent rect. 16 19
631 266.23 temperature 20.0 720 > th dose dependent rect. 16 13
653 266.43 temperature 10.0 720 > th dose dependent sin 14 NA
691 266.80 temperature 20.0 14400 < th dose dependent rect. 15 2
721 267.05 wind 9.0 4320 < th dose dependent rect. 24 1
747 267.21 temperature 15.0 1440 > th dose dependent rect. 19 3
760 267.34 temperature 30.0 1440 < th dose dependent rect. 19 3
767 267.39 temperature 20.0 14400 < th dose dependent rect. 14 4
772 267.41 temperature 15.0 1440 > th dose dependent rect. 21 1
780 267.46 temperature 30.0 1440 < th dose dependent rect. 21 1
787 267.51 radiation 1.0 14400 < th dose dependent rect. 4 1
791 267.54 wind 5.0 4320 < th dose independent rect. 24 1
800 267.62 temperature 15.0 14400 > th dose independent rect. 4 2
804 267.63 temperature 15.0 14400 > th dose independent rect. 4 5
822 267.74 temperature 30.0 720 < th dose dependent rect. 18 8
856 267.99 temperature 30.0 720 < th dose dependent rect. 19 6
889 268.24 temperature 15.0 14400 < th dose independent rect. 4 1
901 268.35 temperature 20.0 14400 < th dose independent rect. 15 1
950 268.63 wind 5.0 1440 > th dose independent rect. 12 22
965 268.73 humidity 60.0 43200 < th dose independent rect. 10 2
966 268.74 radiation 1.0 4320 > th dose independent rect. 18 1