BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0119800 Os07g0119800|Os07g0119800
(143 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G09310.1 | chr1:3009109-3009648 FORWARD LENGTH=180 110 3e-25
AT1G56580.1 | chr1:21198402-21198902 REVERSE LENGTH=167 97 2e-21
AT5G46230.1 | chr5:18742593-18743024 REVERSE LENGTH=144 95 1e-20
AT4G24130.1 | chr4:12527861-12528423 FORWARD LENGTH=158 77 3e-15
AT5G49600.1 | chr5:20130780-20131295 FORWARD LENGTH=172 69 7e-13
AT1G30020.1 | chr1:10515874-10516347 REVERSE LENGTH=158 60 4e-10
>AT1G09310.1 | chr1:3009109-3009648 FORWARD LENGTH=180
Length = 179
Score = 110 bits (275), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 61/137 (44%), Positives = 80/137 (58%), Gaps = 2/137 (1%)
Query: 7 ESHRAGAEIVTGDGVCRKKSIXXXXXXXXXXXXXXXXDIEEFGYNKETGFMWLVQRXXXX 66
E RA AE+ TGD +CR+K+ DIEE GY++E+G +WL Q+
Sbjct: 6 EEVRAKAEMYTGDEICREKTKCFLKEISMPNGLLPLKDIEEVGYDRESGVVWLKQKKSIT 65
Query: 67 XXXXXXXXQTVSYAGEVTAFVEKGKLKKIAGVKTKELLLWLSVVEVYVAEASPEKVTFKT 126
+ VSY EVTA VE GK+KK+ GVK KELL+W+++ E+Y E P K+TFKT
Sbjct: 66 HKFTEID-KLVSYGTEVTAIVETGKIKKLTGVKAKELLIWVTINEIYT-EEPPTKITFKT 123
Query: 127 GTGLSDTFDATAFALGE 143
T LS TF TAF + E
Sbjct: 124 PTTLSRTFPVTAFIVPE 140
>AT1G56580.1 | chr1:21198402-21198902 REVERSE LENGTH=167
Length = 166
Score = 97.4 bits (241), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/135 (42%), Positives = 78/135 (57%), Gaps = 2/135 (1%)
Query: 10 RAGAEIVTGDGVCRKKSIXXXXXXXXXXXXXXXXDIEEFGYNKETGFMWLVQRXXXXXXX 69
RA AE TGD +CR+K+ DIEE GY++ETG +WL Q+
Sbjct: 9 RARAEKYTGDEICREKTKEFLKEVSMPNGLLPLKDIEEVGYDRETGIVWLKQKKSITHKF 68
Query: 70 XXXXXQTVSYAGEVTAFVEKGKLKKIAGVKTKELLLWLSVVEVYVAEA-SPEKVTFKTGT 128
+ VSYA EV A VE GK+KK+ GVK KELL+W+++ E+ + + S K+ F+T T
Sbjct: 69 EAIG-KLVSYATEVIAQVEVGKIKKLTGVKAKELLIWVTLNELVLEQPTSSGKINFRTPT 127
Query: 129 GLSDTFDATAFALGE 143
GLS TF +AF + E
Sbjct: 128 GLSRTFPVSAFVVPE 142
>AT5G46230.1 | chr5:18742593-18743024 REVERSE LENGTH=144
Length = 143
Score = 94.7 bits (234), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 77/140 (55%), Gaps = 2/140 (1%)
Query: 1 MASQAIES-HRAGAEIVTGDGVCRKKSIXXXXXXXXXXXXXXXXDIEEFGYNKETGFMWL 59
M+SQ +S R GAEI G+ C++K+ ++ E G+NK TG++W
Sbjct: 1 MSSQETKSDQREGAEICNGESNCKQKAKEILSTMNLPKGLLPLDNMTEIGHNKSTGYVW- 59
Query: 60 VQRXXXXXXXXXXXXQTVSYAGEVTAFVEKGKLKKIAGVKTKELLLWLSVVEVYVAEASP 119
++ + VSY EVTA +E ++ ++ G+K+KE+L+W+++ E++V P
Sbjct: 60 IKIKNKVQHRFKAIGRNVSYDSEVTAILENRRMSQLTGIKSKEILIWVTISEIFVNHQDP 119
Query: 120 EKVTFKTGTGLSDTFDATAF 139
++TF TGLS TF TAF
Sbjct: 120 TQITFANPTGLSRTFPVTAF 139
>AT4G24130.1 | chr4:12527861-12528423 FORWARD LENGTH=158
Length = 157
Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 73/142 (51%), Gaps = 4/142 (2%)
Query: 1 MASQAI---ESHRAGAEIVTGDGVCRKKSIXXXXXXXXXXXXXXXXDIEEFGYNKETGFM 57
MAS+ + R GAEIV G C K+S+ ++ E G + TG++
Sbjct: 1 MASEGVVVVGGEREGAEIVYGAEECYKQSLELLEELGFPKGVMPLKNLVECGRVRATGYV 60
Query: 58 WLVQRXXXXXXXXXXXXQTVSYAGEVTAFVEKGKLKKIAGVKTKELLLWLSVVEVYVAEA 117
W+ Q + VSY EVTA+V+K +KK+ GVK+K++ LW+ +VE+ + E
Sbjct: 61 WMKQDTPYEHFFEATNTR-VSYGLEVTAYVDKCCMKKMTGVKSKQMFLWVPIVEMSMEEP 119
Query: 118 SPEKVTFKTGTGLSDTFDATAF 139
+K+ FKT G+ +F T F
Sbjct: 120 KSKKIYFKTPMGIGRSFPVTGF 141
>AT5G49600.1 | chr5:20130780-20131295 FORWARD LENGTH=172
Length = 171
Score = 68.9 bits (167), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 64/131 (48%), Gaps = 8/131 (6%)
Query: 7 ESHRAGAEIVTGDGVCRKKSIXXXXXXXXXXXXXXXXDIEEFGYNKETGFMWLVQRXXXX 66
E+ +A AE+ GD CR+K +I+E GY K+TGF+WL +
Sbjct: 4 EAMKAKAEVYHGDKTCREKFGSLLSEIGLPNRLLSNKEIKECGYVKDTGFVWLKHKEKKK 63
Query: 67 XXXXXXXXQ-------TVSYAGEVTAFVEKGKLKKIAGVKTKELLLWLSVVEVYVAEASP 119
V + EVTA+ E ++KK+ GVK KE ++W+S+ E+ V +S
Sbjct: 64 EDQKRRYQDLLRFDNVVVCFEDEVTAYFEPNRIKKLTGVKAKEFMVWISLGEIQVNRSSG 123
Query: 120 EKVTFKTGTGL 130
+TFKT GL
Sbjct: 124 -LITFKTEVGL 133
>AT1G30020.1 | chr1:10515874-10516347 REVERSE LENGTH=158
Length = 157
Score = 60.1 bits (144), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 44 DIEEFGYNKETGFMWLVQRXXXXXXXXXXXXQTVSYAGEVTAFVEKGKLKKIAGVKTKEL 103
D+ E GYNK GF+W+ R + V Y E+TAFVE +++++ GVK+KEL
Sbjct: 45 DMTEVGYNKTKGFVWMRMRSKIEHTFREIG-RRVLYDTEITAFVEDRRMRRLTGVKSKEL 103
Query: 104 LLWLSVVEVYV 114
++W+ V ++++
Sbjct: 104 MIWVPVNDIFI 114
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.131 0.368
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,314,213
Number of extensions: 66003
Number of successful extensions: 152
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 141
Number of HSP's successfully gapped: 6
Length of query: 143
Length of database: 11,106,569
Length adjustment: 89
Effective length of query: 54
Effective length of database: 8,666,545
Effective search space: 467993430
Effective search space used: 467993430
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 106 (45.4 bits)