Os07g0118000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os07g0118000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Protein kinase-like domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.24 | 0.254 | -4360 | -9570 | 0.0236 | -2010000 | -0.0193 | -4410000 | 0.0224 | 0.31 | 70.01 | 106 | -- | -- |
| 3233119562264.75 | 83700 | 5570 | -11600 | 3080 | -1810000 | -4290 | -- | -9430 | 12.6 | 79.76 | 99 | -- | -- |
| 264950051.06 | 758 | -4210 | -10100 | 58.7 | -2010000 | -- | -4370000 | -186 | 11.3 | 70 | 59 | -- | -- |
| 2613132373861.81 | 75300 | 4280 | -12200 | 3420 | -1620000 | -- | -- | -9390 | 12.3 | 69.99 | 28 | -- | -- |
| 161429.7 | 18.7 | -4320 | -9470 | -- | -1990000 | -- | -4370000 | -0.508 | -- | 70 | 28 | -- | -- |
| 53.31 | 0.342 | 2.88 | -0.0264 | 0.0241 | -- | 0.131 | -- | 0.0084 | 1.12 | -- | -- | -- | -- |
| 53.36 | 0.342 | 2.88 | -0.0314 | 0.0313 | -- | -- | -- | 0.00733 | 3.62 | -- | -- | -- | -- |
| 9453.31 | 4.53 | 2.27 | -5.11 | -- | 75.6 | -- | -- | 1.38 | -- | 68.2 | 33 | -- | -- |
| 2130222195233.92 | 68000 | 4150 | -- | 3450 | -1460000 | -- | -- | -9340 | 12.1 | 70 | 28 | -- | -- |
| 53.42 | 0.342 | 2.88 | -0.0301 | -- | -- | -- | -- | 0.00817 | -- | -- | -- | -- | -- |
| 53.39 | 0.342 | 2.88 | -- | 0.0307 | -- | -- | -- | 0.0108 | 3.63 | -- | -- | -- | -- |
| 29.44 | 0.253 | 2.88 | -- | -- | 4.91 | -- | -- | 0.0258 | -- | 79.29 | 38 | -- | -- |
| 53.44 | 0.341 | 2.88 | -- | -- | -- | -- | -- | 0.0115 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 47.00 | atmosphere | 1005.0 | 90 | < th | dose independent | rect. | 10 | 1 |
| 4 | 48.50 | atmosphere | 1005.0 | 270 | < th | dose independent | rect. | 8 | 4 |
| 13 | 48.89 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 21 | 48.95 | radiation | 40.0 | 30 | > th | dose dependent | rect. | 11 | 1 |
| 23 | 48.97 | temperature | 20.0 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 30 | 49.19 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 15 | 1 |
| 114 | 49.66 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 117 | 49.73 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 1 | 1 |
| 119 | 49.73 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 1 | 1 |
| 122 | 49.75 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 13 | 4 |
| 148 | 49.78 | radiation | 40.0 | 30 | > th | dose dependent | sin | 1 | NA |
| 159 | 49.85 | radiation | 40.0 | 30 | > th | dose dependent | no | NA | NA |
| 353 | 49.88 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 356 | 49.88 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 360 | 49.88 | humidity | 80.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 361 | 49.88 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 367 | 49.88 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 368 | 49.88 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 388 | 49.88 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 22 | 23 |
| 393 | 49.89 | atmosphere | 1000.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 395 | 49.89 | radiation | 30.0 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 399 | 49.90 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 405 | 49.91 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 407 | 49.92 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 410 | 49.92 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 413 | 49.93 | wind | 5.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 415 | 49.93 | temperature | 20.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 417 | 49.93 | radiation | 40.0 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 418 | 49.94 | wind | 1.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 420 | 49.94 | temperature | 10.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 422 | 49.94 | temperature | 30.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 423 | 49.94 | humidity | 50.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 426 | 49.94 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 428 | 49.94 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 430 | 49.94 | radiation | 1.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 435 | 49.94 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 20 | 1 |
| 436 | 49.94 | temperature | 10.0 | 30 | > th | dose independent | rect. | 21 | 23 |
| 437 | 49.94 | wind | 9.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 438 | 49.94 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 445 | 49.94 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 461 | 50.00 | humidity | 90.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 462 | 50.00 | atmosphere | 1010.0 | 90 | < th | dose dependent | rect. | 10 | 1 |
| 465 | 50.01 | temperature | 15.0 | 4320 | > th | dose independent | rect. | 13 | 8 |
| 466 | 50.01 | wind | 1.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 471 | 50.04 | atmosphere | 1010.0 | 10 | < th | dose dependent | rect. | 11 | 1 |
| 476 | 50.06 | temperature | 15.0 | 4320 | > th | dose independent | rect. | 17 | 4 |
| 492 | 50.10 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 506 | 50.14 | wind | 9.0 | 30 | < th | dose independent | rect. | 21 | 23 |
| 549 | 50.21 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 552 | 50.22 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 559 | 50.25 | temperature | 15.0 | 4320 | < th | dose independent | rect. | 13 | 6 |
| 614 | 50.37 | temperature | 15.0 | 4320 | < th | dose independent | rect. | 18 | 3 |
| 619 | 50.38 | temperature | 15.0 | 4320 | < th | dose independent | rect. | 18 | 1 |
| 664 | 50.44 | atmosphere | 1010.0 | 270 | < th | dose dependent | rect. | 8 | 4 |
| 712 | 50.48 | atmosphere | 1005.0 | 720 | < th | dose independent | rect. | 1 | 11 |
| 733 | 50.50 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 6 | 1 |
| 770 | 50.53 | wind | 9.0 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 771 | 50.53 | temperature | 15.0 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 817 | 50.59 | temperature | 15.0 | 4320 | < th | dose dependent | rect. | 17 | 4 |
| 829 | 50.60 | temperature | 15.0 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 907 | 50.68 | atmosphere | 1005.0 | 720 | < th | dose independent | rect. | 1 | 1 |
| 950 | 50.73 | temperature | 15.0 | 4320 | < th | dose dependent | rect. | 21 | 1 |